Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.7e-52 207.6 106 100.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 3.7e-41 171.4 106 84.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.9e-39 164.1 108 81.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.2e-26 123.2 110 63.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 9.8e-26 120.2 113 63.7
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.1e-19 100.1 114 57.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.1e-19 98.6 114 57.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-18 96.7 95 57.9
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.5e-18 96.3 97 60.8
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-18 96.3 91 58.2
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-18 95.9 93 60.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.6e-18 95.5 88 60.2
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.6e-18 95.5 93 64.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.4e-18 95.1 102 55.9
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.4e-18 95.1 96 59.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.4e-18 94.7 106 54.7
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.8e-18 94.4 116 55.2
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 7.5e-18 94.0 97 59.8
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-17 93.2 114 54.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.9e-17 92.0 118 51.7
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.9e-17 91.3 91 59.3
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 6.4e-17 90.9 94 56.4
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 8.3e-17 90.5 91 58.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 8.3e-17 90.5 102 56.9
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.1e-16 90.1 105 52.4
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-16 89.7 91 59.3
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.4e-16 89.7 109 54.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-16 89.4 99 57.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 2.4e-16 89.0 95 54.7
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.2e-16 88.6 94 57.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.2e-16 88.6 109 53.2
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-16 88.6 99 57.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 5.4e-16 87.8 110 54.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-16 87.8 113 51.3
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.4e-16 87.8 113 51.3
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.4e-16 87.8 92 58.7
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 7.1e-16 87.4 100 56.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.1e-16 87.4 99 56.6
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 7.1e-16 87.4 94 55.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 7.1e-16 87.4 89 57.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 9.2e-16 87.0 117 51.3
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.6e-15 86.3 102 52.9
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.1e-15 85.9 92 56.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.7e-15 85.5 90 53.3
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-15 85.5 106 51.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-15 85.1 106 52.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.5e-15 85.1 101 52.5
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.6e-15 84.7 123 50.4
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 4.6e-15 84.7 104 50.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.0e-15 84.3 93 55.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.0e-15 84.3 115 47.8
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 7.8e-15 84.0 111 50.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.8e-15 84.0 102 52.9
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.8e-15 84.0 117 50.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.8e-15 84.0 102 55.9
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.0e-14 83.6 107 47.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.0e-14 83.6 107 47.7
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.3e-14 83.2 103 49.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.3e-14 83.2 126 49.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.3e-14 82.4 108 55.6
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.0e-14 82.0 94 55.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.0e-14 82.0 107 50.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.0e-14 82.0 107 50.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.1e-14 81.3 113 53.1
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.1e-14 81.3 107 46.7
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.6e-14 80.9 96 50.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 6.6e-14 80.9 95 48.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.6e-14 80.9 108 52.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 8.6e-14 80.5 97 47.4
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.6e-14 80.5 114 50.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 8.6e-14 80.5 111 48.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.1e-13 80.1 98 50.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-13 80.1 106 49.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.5e-13 79.7 87 54.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.5e-13 79.7 108 48.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-13 79.3 113 48.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.5e-13 79.0 105 52.4
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.3e-13 78.6 110 51.8
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.3e-13 78.2 100 50.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.3e-13 78.2 105 46.7
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 4.3e-13 78.2 87 51.7
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.3e-13 78.2 110 50.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.3e-13 78.2 88 52.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.3e-13 77.4 107 48.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.3e-13 77.4 107 48.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 7.3e-13 77.4 93 54.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.5e-13 77.0 109 45.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-12 76.6 87 50.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.2e-12 76.6 115 52.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.6e-12 76.3 104 48.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-12 76.3 109 45.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.6e-12 76.3 107 48.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-12 76.3 107 48.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.6e-12 76.3 95 50.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.6e-12 76.3 126 43.7
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.6e-12 76.3 126 43.7
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.6e-12 76.3 101 54.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.6e-12 76.3 114 46.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-12 76.3 96 53.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-12 76.3 96 53.1
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-12 75.9 109 45.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.8e-12 75.5 92 51.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.6e-12 75.1 89 51.7
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.7e-12 74.7 94 48.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.2e-12 74.3 99 48.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.2e-12 74.3 110 46.4
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.1e-12 73.9 98 51.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 8.1e-12 73.9 105 45.7
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 112 46.4
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-11 73.6 115 44.3
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.1e-11 73.6 115 52.2
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-11 73.6 109 49.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.1e-11 73.6 97 47.4
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-11 73.2 115 44.3
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.4e-11 73.2 105 47.6
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.8e-11 72.8 111 46.8
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 91 47.3
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.3e-11 72.4 106 48.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.1e-11 72.0 115 47.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.0e-11 71.6 113 47.8
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.0e-11 71.6 91 47.3
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 5.2e-11 71.2 101 46.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 5.2e-11 71.2 98 46.9
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 6.8e-11 70.9 88 48.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.9e-11 70.5 96 50.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-10 70.1 108 43.5
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.6e-10 68.9 115 45.2
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.6e-10 68.9 85 45.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-10 68.9 91 44.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.6e-10 68.9 112 47.3
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 3.4e-10 68.6 101 40.6
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.4e-10 68.2 98 45.9
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 4.4e-10 68.2 101 40.6
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.4e-10 68.2 95 49.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 5.8e-10 67.8 96 45.8
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.8e-10 67.8 97 47.4
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 5.8e-10 67.8 103 46.6
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 7.6e-10 67.4 104 41.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.9e-10 67.0 98 45.9
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-09 66.6 96 42.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-09 66.6 103 43.7
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.3e-09 66.6 93 48.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.7e-09 66.2 103 43.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.7e-09 66.2 103 43.7
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.7e-09 66.2 103 43.7
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.7e-09 66.2 104 44.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.7e-09 66.2 105 45.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-09 65.9 96 45.8
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.2e-09 65.9 96 45.8
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-09 65.5 101 39.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.9e-09 65.5 101 39.6
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.9e-09 65.5 101 39.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.9e-09 65.5 95 44.2
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.8e-09 65.1 110 44.5
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.8e-09 65.1 99 47.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.9e-09 64.7 99 46.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 6.4e-09 64.3 98 42.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.4e-09 64.3 132 40.2
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 8.4e-09 63.9 105 43.8
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 8.4e-09 63.9 85 47.1
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-08 63.2 102 42.2
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.9e-08 62.8 102 41.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 103 43.7
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 92 41.3
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.1e-08 60.8 90 44.4
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-07 60.1 118 36.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-07 60.1 87 44.8
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.1e-07 59.3 98 43.9
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 6.0e-07 57.8 91 44.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 6.0e-07 57.8 91 44.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 7.8e-07 57.4 98 40.8
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 6.6e-06 54.3 114 40.4


User provided reference genes

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