Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G160101 Populus trichocarpa HOM05D006636 ORTHO05D008266 3.4e-36 154.5 77 100.0
Potri.010G079100 Populus trichocarpa HOM05D006636 ORTHO05D008266 6.7e-32 140.2 77 89.6
Gohir.A02G035000 Gossypium hirsutum HOM05D006636 ORTHO05D008266 2.9e-27 124.8 77 76.6
Gohir.D02G041800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 2.9e-27 124.8 77 76.6
Gorai.005G046200 Gossypium raimondii HOM05D006636 ORTHO05D008266 2.9e-27 124.8 77 76.6
QL06p014938 Quercus lobata HOM05D006636 ORTHO05D008266 3.8e-27 124.4 75 78.7
Gohir.D10G147800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 4.9e-27 124.0 77 76.6
Gorai.011G165000 Gossypium raimondii HOM05D006636 ORTHO05D008266 4.9e-27 124.0 77 76.6
CiPaw.02G118100 Carya illinoinensis HOM05D006636 ORTHO05D008266 8.4e-27 123.2 77 77.9
Atru.chr4.2290 Acer truncatum HOM05D006636 ORTHO05D008266 1.1e-26 122.9 77 75.3
Thecc.04G243200 Theobroma cacao HOM05D006636 ORTHO05D008266 1.9e-26 122.1 77 76.6
arahy.Tifrunner.gnm1.ann1.G1PS4Z Arachis hypogaea HOM05D006636 ORTHO05D008266 3.2e-26 121.3 74 78.4
COL.COLO4_15761 Corchorus olitorius HOM05D006636 ORTHO05D008266 7.1e-26 120.2 74 71.6
CARHR220860 Cardamine hirsuta HOM05D006636 ORTHO05D008266 9.3e-26 119.8 75 73.3
Cfa008404 Carpinus fangiana HOM05D006636 ORTHO05D008266 1.2e-25 119.4 74 75.7
CiPaw.01G192900 Carya illinoinensis HOM05D006636 ORTHO05D008266 1.2e-25 119.4 72 77.8
Manes.03G170500 Manihot esculenta HOM05D006636 ORTHO05D008266 1.2e-25 119.4 74 78.4
Duzib151G1121 Durio zibethinus HOM05D006636 ORTHO05D008266 1.6e-25 119.0 77 71.4
Duzib212G0484 Durio zibethinus HOM05D006636 ORTHO05D008266 2.1e-25 118.6 77 72.7
Sabra10G0063800 Salix brachista HOM05D006636 ORTHO05D008266 2.1e-25 118.6 119 58.0
THA.LOC104808586 Tarenaya hassleriana HOM05D006636 ORTHO05D008266 2.1e-25 118.6 75 73.3
CARHR043050 Cardamine hirsuta HOM05D006636 ORTHO05D008266 2.7e-25 118.2 75 73.3
Gohir.A10G118900 Gossypium hirsutum HOM05D006636 ORTHO05D008266 3.5e-25 117.9 77 72.7
Prupe.1G025800 Prunus persica HOM05D006636 ORTHO05D008266 3.5e-25 117.9 74 75.7
AT4G14615 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 4.6e-25 117.5 77 70.1
BcaB04g18245 Brassica carinata HOM05D006636 ORTHO05D008266 4.6e-25 117.5 76 71.1
A08p11260 Brassica napus HOM05D006636 ORTHO05D008266 4.6e-25 117.5 76 71.1
BraA08t33120Z Brassica rapa HOM05D006636 ORTHO05D008266 4.6e-25 117.5 76 71.1
CSS0008233 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 4.6e-25 117.5 77 74.0
CSS0036965 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 4.6e-25 117.5 77 74.0
Thhalv10011910m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 4.6e-25 117.5 75 72.0
Aa31LG9G2720 Aethionema arabicum HOM05D006636 ORTHO05D008266 6.0e-25 117.1 75 69.3
Phvul.006G006400 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 6.0e-25 117.1 74 75.7
Phvul.010G060600 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 6.0e-25 117.1 75 73.3
Carub.0007s2759 Capsella rubella HOM05D006636 ORTHO05D008266 1.0e-24 116.3 75 70.7
BcaC07g37832 Brassica carinata HOM05D006636 ORTHO05D008266 1.3e-24 115.9 76 69.7
BolC8t48218H Brassica oleracea HOM05D006636 ORTHO05D008266 1.3e-24 115.9 76 69.7
Ciclev10006361m.g Citrus clementina HOM05D006636 ORTHO05D008266 1.3e-24 115.9 77 71.4
Eucgr.H03183 Eucalyptus grandis HOM05D006636 ORTHO05D008266 1.3e-24 115.9 74 73.0
AL1G61120 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 1.8e-24 115.5 75 70.7
Thhalv10026714m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 1.8e-24 115.5 75 72.0
Sp7g12710 Schrenkiella parvula HOM05D006636 ORTHO05D008266 1.8e-24 115.5 75 72.0
Lalb_Chr03g0037601 Lupinus albus HOM05D006636 ORTHO05D008266 2.3e-24 115.2 74 73.0
CANSAT80G2460 Cannabis sativa HOM05D006636 ORTHO05D008266 3.0e-24 114.8 77 70.1
Cc03_g04590 Coffea canephora HOM05D006636 ORTHO05D008266 3.0e-24 114.8 74 73.0
RcHm_v2.0_Chr4g0388961 Rosa chinensis HOM05D006636 ORTHO05D008266 3.0e-24 114.8 74 68.9
AL7G41500 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 3.9e-24 114.4 75 69.3
FAN12G3161 Fragaria x ananassa HOM05D006636 ORTHO05D008266 5.1e-24 114.0 74 70.3
FAN22G1829 Fragaria x ananassa HOM05D006636 ORTHO05D008266 5.1e-24 114.0 74 70.3
Manes.15G035100 Manihot esculenta HOM05D006636 ORTHO05D008266 5.1e-24 114.0 74 73.0
AUR62005850 Chenopodium quinoa HOM05D006636 ORTHO05D008266 6.7e-24 113.6 76 68.4
Glyma.02G001300 Glycine max HOM05D006636 ORTHO05D008266 6.7e-24 113.6 74 71.6
PGR142G1808 Punica granatum HOM05D006636 ORTHO05D008266 6.7e-24 113.6 74 70.3
vmacro15399 Vaccinium macrocarpon HOM05D006636 ORTHO05D008266 6.7e-24 113.6 77 71.4
Aqoxy5G00371 Aquilegia oxysepala HOM05D006636 ORTHO05D008266 8.7e-24 113.2 74 70.3
CSS0035223 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 1.1e-23 112.8 77 70.1
Migut.N00229 Erythranthe guttata HOM05D006636 ORTHO05D008266 1.1e-23 112.8 74 74.3
Nn3g19491 Nelumbo nucifera HOM05D006636 ORTHO05D008266 1.1e-23 112.8 77 68.8
EL10Ac6g13264 Beta vulgaris HOM05D006636 ORTHO05D008266 1.9e-23 112.1 75 69.3
MD16G1204700 Malus domestica HOM05D006636 ORTHO05D008266 1.9e-23 112.1 73 69.9
Ah.03g134670 Amaranthus hybridus HOM05D006636 ORTHO05D008266 2.5e-23 111.7 74 70.3
ClCG06G006590 Citrullus lanatus HOM05D006636 ORTHO05D008266 2.5e-23 111.7 77 71.4
AUR62032843 Chenopodium quinoa HOM05D006636 ORTHO05D008266 3.3e-23 111.3 76 67.1
Ah.02g129360 Amaranthus hybridus HOM05D006636 ORTHO05D008266 4.3e-23 110.9 74 70.3
Lj3g0021432 Lotus japonicus HOM05D006636 ORTHO05D008266 4.3e-23 110.9 75 72.0
MD13G1203300 Malus domestica HOM05D006636 ORTHO05D008266 5.7e-23 110.5 73 68.5
Oeu029765.1 Olea europaea HOM05D006636 ORTHO05D008266 5.7e-23 110.5 74 73.0
AT1G52825 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 7.4e-23 110.2 73 69.9
Hund05854 Selenicereus undatus HOM05D006636 ORTHO05D008266 7.4e-23 110.2 73 68.5
MSTRG.24709 Avicennia marina HOM05D006636 ORTHO05D008266 9.6e-23 109.8 77 70.1
Sed0018024 Sechium edule HOM05D006636 ORTHO05D008266 1.3e-22 109.4 77 70.1
SalBow2G2841 Salvia bowleyana HOM05D006636 ORTHO05D008266 2.1e-22 108.6 74 68.9
Dinv44607 Davidia involucrata HOM05D006636 ORTHO05D008266 2.8e-22 108.2 74 70.3
Solyc09g083070.3 Solanum lycopersicum HOM05D006636 ORTHO05D008266 4.8e-22 107.5 74 66.2
Medtr1g040905 Medicago truncatula HOM05D006636 ORTHO05D008266 6.3e-22 107.1 78 69.2
Ca_12203_v3 Cicer arietinum L. HOM05D006636 ORTHO05D008266 8.2e-22 106.7 75 70.7
Sopen09g031950 Solanum pennellii HOM05D006636 ORTHO05D008266 8.2e-22 106.7 74 66.2
TWI53G1752 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 8.2e-22 106.7 77 64.9
TWI53G1902 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 8.2e-22 106.7 77 64.9
Dinv14071 Davidia involucrata HOM05D006636 ORTHO05D008266 1.4e-21 105.9 66 78.8
ECA240G3921 Erigeron canadensis HOM05D006636 ORTHO05D008266 1.4e-21 105.9 74 68.9
Nitab4.5_0001787g0030 Nicotiana tabacum HOM05D006636 ORTHO05D008266 1.4e-21 105.9 74 64.9
Peaxi162Scf00788g00311 Petunia axillaris HOM05D006636 ORTHO05D008266 1.4e-21 105.9 74 66.2
Nitab4.5_0001856g0080 Nicotiana tabacum HOM05D006636 ORTHO05D008266 1.8e-21 105.5 74 64.9
TPR.G32796 Trifolium pratense HOM05D006636 ORTHO05D008266 1.8e-21 105.5 75 69.3
Oeu032618.1 Olea europaea HOM05D006636 ORTHO05D008266 3.1e-21 104.8 74 68.9
Psat6g136920 Pisum sativum HOM05D006636 ORTHO05D008266 4.1e-21 104.4 75 66.7
Hund25206 Selenicereus undatus HOM05D006636 ORTHO05D008266 4.1e-21 104.4 74 62.2
Lsat_1_v5_gn_3_124880 Lactuca sativa HOM05D006636 ORTHO05D008266 5.3e-21 104.0 73 68.5
Lsat_1_v5_gn_6_37261 Lactuca sativa HOM05D006636 ORTHO05D008266 5.3e-21 104.0 73 68.5
CAN.G749.28 Capsicum annuum HOM05D006636 ORTHO05D008266 9.0e-21 103.2 73 64.4
Carub.0001s4194 Capsella rubella HOM05D006636 ORTHO05D008266 1.2e-20 102.8 69 68.1
Sc22g0003980 Simmondsia chinensis HOM05D006636 ORTHO05D008266 1.2e-20 102.8 74 63.5
ATR0665G452 Amborella trichopoda HOM05D006636 ORTHO05D008266 1.5e-20 102.4 67 68.7
PSO210G2897 Papaver somniferum HOM05D006636 ORTHO05D008266 3.4e-20 101.3 75 60.0
TWI73G0386 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 3.4e-20 101.3 77 62.3
Psat4g201760 Pisum sativum HOM05D000716 ORTHO05D009512 5.9e-20 100.5 75 64.0
PSO832G4373 Papaver somniferum HOM05D006636 ORTHO05D008266 3.8e-19 97.8 75 60.0
Haze_11264 Corylus avellana HOM05D006636 ORTHO05D008266 6.5e-19 97.1 104 51.9
TAR365G0562 Trochodendron aralioides HOM05D006636 ORTHO05D008266 6.5e-19 97.1 77 58.4
Psat4g152400 Pisum sativum HOM05D006636 ORTHO05D008266 1.1e-18 96.3 75 62.7
Zm00001eb116910 Zea mays HOM05D006636 ORTHO05D008266 3.2e-18 94.7 73 61.6
Os07g0181800 Oryza sativa ssp. japonica HOM05D006636 ORTHO05D008266 5.5e-18 94.0 73 58.9
Psat4g152480 Pisum sativum HOM05D000716 ORTHO05D009512 7.2e-18 93.6 78 61.5
GSVIVG01018087001 Vitis vinifera HOM05D006636 ORTHO05D008266 9.3e-18 93.2 74 60.8
CDE07G1452 Ceratophyllum demersum HOM05D006636 ORTHO05D008266 1.1e-15 86.3 75 53.3
Pp3c4_21990 Physcomitrium patens HOM05D006636 ORTHO05D008266 1.5e-15 85.9 64 56.2
HPP92_009619 Vanilla planifolia HOM05D006636 ORTHO05D008266 1.5e-15 85.9 72 54.2
Mapoly0075s0084 Marchantia polymorpha HOM05D006636 ORTHO05D008266 1.2e-12 76.3 64 50.0
Psat0s152g0080 Pisum sativum HOM05D006636 ORTHO05D008266 1.5e-12 75.9 57 64.9
unitig_26.g9474 Utricularia gibba HOM05D006636 ORTHO05D008266 2.0e-12 75.5 58 69.0
Actinidia40100 Actinidia chinensis HOM05D006636 ORTHO05D008266 3.8e-11 71.2 44 79.5
SalBow4G0852 Salvia bowleyana HOM05D006636 ORTHO05D008266 2.5e-10 68.6 43 74.4
SHI00567 Sapria himalayana HOM05D006636 ORTHO05D008266 4.2e-10 67.8 55 67.3
PGSC0003DMG400006103 Solanum tuberosum HOM05D006636 ORTHO05D008266 4.2e-10 67.8 46 69.6
HanXRQChr13g0424641 Helianthus annuus HOM05D006636 ORTHO05D008266 1.4e-08 62.8 47 59.6
AagrBONN_evm.TU.Sc2ySwM_117.3049 Anthoceros agrestis HOM05D006636 ORTHO05D008266 2.3e-08 62.0 61 45.9
FvH4_4g02000 Fragaria vesca HOM05D006636 ORTHO05D008266 3.9e-08 61.2 34 79.4
GSVIVG01002945001 Vitis vinifera HOM05D006636 ORTHO05D008266 2.8e-06 55.1 41 61.0
MCO07G270 Micromonas commoda HOM05D006636 ORTHO05D008266 4.8e-06 54.3 63 41.3


User provided reference genes

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