Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G159200 Populus trichocarpa HOM05D008144 ORTHO05D010081 0.0e+00 1556.6 819 100.0
Sabra08G0121300 Salix brachista HOM05D008144 ORTHO05D010081 0.0e+00 1223.4 821 81.2
Potri.010G081000 Populus trichocarpa HOM05D008144 ORTHO05D010081 9.8e-307 1056.6 820 71.2
Manes.03G171900 Manihot esculenta HOM05D008144 ORTHO05D010081 1.1e-119 435.3 1132 34.1
Prupe.1G023500 Prunus persica HOM05D008144 ORTHO05D010081 1.1e-116 425.2 831 40.0
QL06p000574 Quercus lobata HOM05D008144 ORTHO05D010081 1.2e-110 405.2 904 36.8
CiPaw.01G194000 Carya illinoinensis HOM05D008144 ORTHO05D010081 7.9e-99 365.9 883 37.3
MD13G1201700 Malus domestica HOM05D008144 ORTHO05D010081 1.6e-94 351.7 840 36.8
Thecc.04G241000 Theobroma cacao HOM05D008144 ORTHO05D010081 2.0e-94 351.3 839 37.4
Dinv14059 Davidia involucrata HOM05D008144 ORTHO05D010081 1.5e-92 345.1 826 35.5
Duzib151G0265 Durio zibethinus HOM05D008144 ORTHO05D010081 9.4e-84 315.8 837 34.5
Duzib212G0503 Durio zibethinus HOM05D008144 ORTHO05D010081 8.0e-83 312.8 854 34.2
Haze_11249 Corylus avellana HOM05D008144 ORTHO05D010081 1.3e-80 305.4 963 33.5
CSS0041819 Camellia sinensis var. sinensis HOM05D008144 ORTHO05D010081 2.2e-72 278.1 829 33.8
Ciclev10004664m.g Citrus clementina HOM05D008144 ORTHO05D010081 5.2e-66 256.9 586 35.2
TWI73G1171 Tripterygium wilfordii HOM05D008144 ORTHO05D010081 4.9e-64 250.4 873 31.5
Dinv44593 Davidia involucrata HOM05D008144 ORTHO05D010081 6.4e-64 250.0 816 31.7
TAR362G0851 Trochodendron aralioides HOM05D008144 ORTHO05D010081 2.7e-62 244.6 904 28.5
FAN17G0986 Fragaria x ananassa HOM05D008144 ORTHO05D010081 3.3e-60 237.7 829 32.0
FAN17G1249 Fragaria x ananassa HOM05D008144 ORTHO05D010081 3.3e-60 237.7 829 32.0
GSVIVG01018069001 Vitis vinifera HOM05D008144 ORTHO05D010081 3.3e-60 237.7 784 31.5
FvH4_4g01740 Fragaria vesca HOM05D008144 ORTHO05D010081 8.9e-58 229.6 829 31.5
FAN12G1940 Fragaria x ananassa HOM05D008144 ORTHO05D010081 6.4e-56 223.4 838 30.9
RcHm_v2.0_Chr4g0388601 Rosa chinensis HOM05D008144 ORTHO05D010081 7.0e-55 219.9 761 31.7
FAN22G0807 Fragaria x ananassa HOM05D008144 ORTHO05D010081 6.6e-53 213.4 853 30.4
Atru.chr4.2325 Acer truncatum HOM05D008144 ORTHO05D010081 5.6e-52 210.3 1297 25.2
Gorai.005G045900 Gossypium raimondii HOM05D008144 ORTHO05D010081 1.0e-45 189.5 846 29.3
COL.COLO4_13184 Corchorus olitorius HOM05D008144 ORTHO05D010081 1.6e-43 182.2 856 29.7
Gohir.D02G041500 Gossypium hirsutum HOM05D008144 ORTHO05D010081 4.7e-43 180.6 847 29.0
MD16G1202000 Malus domestica HOM05D008144 ORTHO05D010081 6.2e-43 180.3 266 45.1
CANSAT78G0891 Cannabis sativa HOM05D008144 ORTHO05D010081 4.9e-40 170.6 961 28.0
Glyma.02G002200 Glycine max HOM05D008144 ORTHO05D010081 8.4e-40 169.9 832 28.1
Gohir.A02G034700 Gossypium hirsutum HOM05D008144 ORTHO05D010081 4.6e-38 164.1 858 28.2
Eucgr.H03407 Eucalyptus grandis HOM05D008144 ORTHO05D010081 4.0e-34 151.0 580 30.0
Sabra10G0062200 Salix brachista HOM05D008144 ORTHO05D010081 3.8e-32 144.4 201 47.3
TPR.G32783 Trifolium pratense HOM05D008144 ORTHO05D010081 1.0e-29 136.3 538 28.8
ClCG05G004780 Citrullus lanatus HOM05D025894 ORTHO05D010081 3.9e-29 134.4 509 28.7
Psat6g103240 Pisum sativum HOM05D008144 ORTHO05D010081 5.1e-29 134.0 223 40.4
Dinv33607 Davidia involucrata HOM05D008144 ORTHO05D010081 8.7e-29 133.3 131 54.2
PGSC0003DMG400006073 Solanum tuberosum HOM05D014400 ORTHO05D010081 1.1e-28 132.9 841 27.1
Medtr1g041300 Medicago truncatula HOM05D008144 ORTHO05D010081 9.6e-28 129.8 581 28.7
VMungo0720G0769 Vigna mungo HOM05D008144 ORTHO05D010081 2.1e-27 128.6 847 26.6
Sopen09g031740 Solanum pennellii HOM05D014400 ORTHO05D010081 1.4e-26 125.9 829 26.4
Cpa.g.sc44.134 Carica papaya HOM05D008144 ORTHO05D010081 1.3e-24 119.4 574 27.0
CsaV3_3G012810 Cucumis sativus L. HOM05D025894 ORTHO05D010081 1.9e-23 115.5 181 39.8
Solyc09g082900.3 Solanum lycopersicum HOM05D014400 ORTHO05D010081 3.2e-23 114.8 827 25.5
Lj6g0001132 Lotus japonicus HOM05D008144 ORTHO05D010081 4.2e-23 114.4 629 26.4
Phvul.007G278800 Phaseolus vulgaris HOM05D008144 ORTHO05D010081 4.2e-23 114.4 809 26.2
Sed0006870 Sechium edule HOM05D025894 ORTHO05D010081 4.2e-23 114.4 509 27.3
TAR633G0610 Trochodendron aralioides HOM05D008144 ORTHO05D010081 2.1e-22 112.1 126 49.2
Nitab4.5_0000224g0080 Nicotiana tabacum HOM05D014400 ORTHO05D010081 1.8e-21 109.0 823 25.2
MELO3C006492.2 Cucumis melo HOM05D025894 ORTHO05D010081 3.0e-21 108.2 418 28.7
Dinv14057 Davidia involucrata HOM05D008144 ORTHO05D010081 3.0e-21 108.2 287 35.2
Aqoxy2G03478 Aquilegia oxysepala HOM05D008144 ORTHO05D031257 6.7e-21 107.1 845 23.8
DCAR_002363 Daucus carota HOM05D008144 ORTHO05D010081 5.6e-20 104.0 551 27.0
PGR004G2389 Punica granatum HOM05D008144 ORTHO05D010081 5.3e-18 97.4 883 25.7
Oeu009118.1 Olea europaea HOM05D008144 ORTHO05D010081 9.9e-17 93.2 496 26.2
Nitab4.5_0002118g0020 Nicotiana tabacum HOM05D014400 ORTHO05D010081 1.3e-16 92.8 631 25.5
Lalb_Chr03g0037551 Lupinus albus HOM05D008144 ORTHO05D010081 1.1e-15 89.7 862 24.0
SalBow3G2772 Salvia bowleyana HOM05D014400 ORTHO05D010081 2.4e-15 88.6 160 38.1
Peaxi162Scf00758g00019 Petunia axillaris HOM05D014400 ORTHO05D010081 3.2e-15 88.2 800 25.4
Nn1g02499 Nelumbo nucifera HOM05D008144 ORTHO05D010081 2.1e-14 85.5 1096 21.5
MBI11_g00116_MAGBIO Magnolia biondii HOM05D008144 ORTHO05D010081 1.0e-13 83.2 240 28.8
Migut.N00217 Erythranthe guttata HOM05D014400 ORTHO05D010081 1.1e-12 79.7 156 37.2
Rhsim04G0196200 Rhododendron simsii HOM05D008144 ORTHO05D010081 9.6e-12 76.6 180 37.2
Actinidia04502 Actinidia chinensis HOM05D008144 ORTHO05D010081 4.8e-11 74.3 826 23.1
Actinidia14081 Actinidia chinensis HOM05D008144 ORTHO05D010081 1.1e-10 73.2 91 50.5
THA.LOC104809081 Tarenaya hassleriana HOM05D011210 ORTHO05D013204 1.1e-10 73.2 166 34.9
SGA_v2.0_scaffold308G48120 Striga asiatica HOM05D014400 ORTHO05D010081 2.9e-08 65.1 213 32.4
SEGI_34568 Sequoiadendron giganteum HOM05D008144 ORTHO05D010081 3.8e-08 64.7 179 33.0
AL7G41440 Arabidopsis lyrata HOM05D011210 ORTHO05D013204 4.9e-08 64.3 181 33.1
MD16G1201900 Malus domestica HOM05D008144 ORTHO05D010081 1.4e-07 62.8 77 54.5
Sp7g12760 Schrenkiella parvula HOM05D011210 ORTHO05D013204 2.7e-06 58.5 341 24.3
BcaC09g50135 Brassica carinata HOM05D011210 ORTHO05D013204 4.6e-06 57.8 323 29.7


User provided reference genes

Program Settings