Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G152400 Populus trichocarpa HOM05D002472 ORTHO05D002827 1.5e-133 479.6 251 100.0
Gohir.D02G038700 Gossypium hirsutum HOM05D002472 ORTHO05D002827 1.0e-17 94.7 103 48.5
Gorai.005G042600 Gossypium raimondii HOM05D002472 ORTHO05D002827 4.0e-17 92.8 105 47.6
Gohir.A02G032000 Gossypium hirsutum HOM05D002472 ORTHO05D002827 1.5e-16 90.9 99 48.5
Dinv44533 Davidia involucrata HOM05D002472 ORTHO05D002827 2.0e-16 90.5 129 42.6
Thecc.04G231500 Theobroma cacao HOM05D002472 ORTHO05D002827 2.0e-16 90.5 103 45.6
Duzib151G0609 Durio zibethinus HOM05D002472 ORTHO05D002827 3.4e-16 89.7 103 46.6
Gohir.A11G255600 Gossypium hirsutum HOM05D002472 ORTHO05D002827 8.3e-15 85.1 232 37.5
Migut.N01927 Erythranthe guttata HOM05D002472 ORTHO05D002827 1.1e-14 84.7 102 45.1
Lalb_Chr15g0076891 Lupinus albus HOM05D002472 ORTHO05D002827 1.4e-14 84.3 237 33.8
unitig_899.g15577 Utricularia gibba HOM05D002472 ORTHO05D002827 1.4e-14 84.3 243 34.2
Gohir.D11G313500 Gossypium hirsutum HOM05D002472 ORTHO05D002827 2.4e-14 83.6 224 37.9
Gorai.007G285400 Gossypium raimondii HOM05D002472 ORTHO05D002827 2.4e-14 83.6 232 37.1
Prupe.6G339400 Prunus persica HOM05D002472 ORTHO05D002827 2.4e-14 83.6 102 45.1
QL06p002607 Quercus lobata HOM05D002472 ORTHO05D002827 2.4e-14 83.6 249 32.9
COL.COLO4_15276 Corchorus olitorius HOM05D002472 ORTHO05D002827 4.1e-14 82.8 232 35.8
COL.COLO4_15282 Corchorus olitorius HOM05D002472 ORTHO05D002827 4.1e-14 82.8 117 41.9
Eucgr.H04386 Eucalyptus grandis HOM05D002472 ORTHO05D002827 5.4e-14 82.4 102 44.1
vmacro05069 Vaccinium macrocarpon HOM05D002472 ORTHO05D002827 9.2e-14 81.6 114 41.2
Cc02_g31530 Coffea canephora HOM05D002472 ORTHO05D002827 1.2e-13 81.3 163 34.4
QL06p002592 Quercus lobata HOM05D002472 ORTHO05D002827 1.2e-13 81.3 106 40.6
GSVIVG01021855001 Vitis vinifera HOM05D002472 ORTHO05D002827 1.2e-13 81.3 102 44.1
Aqoxy5G00475 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 1.6e-13 80.9 114 42.1
CANSAT78G0261 Cannabis sativa HOM05D002472 ORTHO05D002827 1.6e-13 80.9 109 40.4
Glyma.19G242800 Glycine max HOM05D002472 ORTHO05D002827 1.6e-13 80.9 242 33.5
Gorai.007G344700 Gossypium raimondii HOM05D002472 ORTHO05D002827 1.6e-13 80.9 224 37.5
Lalb_Chr18g0045101 Lupinus albus HOM05D002472 ORTHO05D002827 2.7e-13 80.1 102 43.1
CDE10G1257 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 3.5e-13 79.7 240 33.3
COL.COLO4_15279 Corchorus olitorius HOM05D002472 ORTHO05D002827 3.5e-13 79.7 99 49.5
ECA238G2290 Erigeron canadensis HOM05D002472 ORTHO05D001990 3.5e-13 79.7 102 43.1
Manes.03G179100 Manihot esculenta HOM05D002472 ORTHO05D002827 3.5e-13 79.7 219 35.2
Pp3c9_18900 Physcomitrium patens HOM05D002472 ORTHO05D002827 5.9e-13 79.0 99 40.4
Sed0022641 Sechium edule HOM05D002472 ORTHO05D002827 5.9e-13 79.0 237 33.8
COL.COLO4_15277 Corchorus olitorius HOM05D002472 ORTHO05D002827 7.8e-13 78.6 104 42.3
Lsat_1_v5_gn_2_65020 Lactuca sativa HOM05D002472 ORTHO05D002827 7.8e-13 78.6 102 43.1
Psat3g008240 Pisum sativum HOM05D002472 ORTHO05D002827 7.8e-13 78.6 98 44.9
Migut.N01928 Erythranthe guttata HOM05D002472 ORTHO05D002827 1.0e-12 78.2 95 42.1
FAN14G3559 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.7e-12 77.4 128 36.7
Gohir.A11G298700 Gossypium hirsutum HOM05D002472 ORTHO05D002827 1.7e-12 77.4 224 35.7
Hma1.2p1_0332F.1_g127690 Hydrangea macrophylla HOM05D002472 ORTHO05D002827 3.0e-12 76.6 231 35.5
Sed0025137 Sechium edule HOM05D002472 ORTHO05D002827 3.0e-12 76.6 224 34.8
Thecc.05G289000 Theobroma cacao HOM05D002472 ORTHO05D002827 3.0e-12 76.6 244 34.4
Os03g0695500 Oryza sativa ssp. japonica HOM05D002472 ORTHO05D002827 3.9e-12 76.3 106 40.6
QL03p024106 Quercus lobata HOM05D002472 ORTHO05D002827 3.9e-12 76.3 241 34.4
QL03p024181 Quercus lobata HOM05D002472 ORTHO05D002827 3.9e-12 76.3 241 34.4
Actinidia30924 Actinidia chinensis HOM05D002472 ORTHO05D002827 5.0e-12 75.9 240 34.2
Duzib177G0067 Durio zibethinus HOM05D002472 ORTHO05D002827 5.0e-12 75.9 232 34.9
SalBow3G1967 Salvia bowleyana HOM05D002472 ORTHO05D002827 5.0e-12 75.9 237 33.3
CANSAT54G0369 Cannabis sativa HOM05D002472 ORTHO05D002827 6.6e-12 75.5 229 35.8
FAN05G4815 Fragaria x ananassa HOM05D002472 ORTHO05D002827 6.6e-12 75.5 118 37.3
HanXRQChr10g0295231 Helianthus annuus HOM05D002472 ORTHO05D002827 6.6e-12 75.5 101 40.6
Lsat_1_v5_gn_2_65120 Lactuca sativa HOM05D002472 ORTHO05D002827 6.6e-12 75.5 138 35.5
CiPaw.07G006900 Carya illinoinensis HOM05D002472 ORTHO05D002827 8.6e-12 75.1 237 34.2
Lsat_1_v5_gn_2_65060 Lactuca sativa HOM05D002472 ORTHO05D002827 8.6e-12 75.1 101 41.6
Manes.08G127900 Manihot esculenta HOM05D002472 ORTHO05D002827 8.6e-12 75.1 102 42.2
PGR004G0868 Punica granatum HOM05D002472 ORTHO05D002827 8.6e-12 75.1 159 35.8
CDE10G0574 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 1.1e-11 74.7 241 32.4
FvH4_6g03530 Fragaria vesca HOM05D002472 ORTHO05D002827 1.1e-11 74.7 99 41.4
FAN14G0010 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.1e-11 74.7 99 41.4
CsaV3_1G045680 Cucumis sativus L. HOM05D002472 ORTHO05D002827 1.5e-11 74.3 224 33.9
FAN05G1585 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.5e-11 74.3 99 41.4
FAN05G3932 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.5e-11 74.3 99 41.4
FAN09G3673 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.9e-11 73.9 99 40.4
Actinidia05762 Actinidia chinensis HOM05D002472 ORTHO05D002827 2.5e-11 73.6 231 36.4
Dinv11559 Davidia involucrata HOM05D002472 ORTHO05D002827 2.5e-11 73.6 226 35.4
HanXRQChr10g0295211 Helianthus annuus HOM05D002472 ORTHO05D002827 2.5e-11 73.6 102 39.2
Sabra05G0044700 Salix brachista HOM05D002472 ORTHO05D002827 2.5e-11 73.6 104 42.3
FvH4_6g03490 Fragaria vesca HOM05D002472 ORTHO05D002827 3.3e-11 73.2 118 36.4
FAN05G2994 Fragaria x ananassa HOM05D002472 ORTHO05D002827 3.3e-11 73.2 109 38.5
Atru.chr2.723 Acer truncatum HOM05D002472 ORTHO05D002827 4.3e-11 72.8 223 34.1
Migut.N01932 Erythranthe guttata HOM05D002472 ORTHO05D002827 4.3e-11 72.8 104 42.3
Cc02_g31610 Coffea canephora HOM05D002472 ORTHO05D002827 5.6e-11 72.4 110 38.2
HanXRQChr14g0446141 Helianthus annuus HOM05D002472 ORTHO05D002827 5.6e-11 72.4 245 31.0
TPR.G6975 Trifolium pratense HOM05D002472 ORTHO05D002827 5.6e-11 72.4 98 42.9
HPP92_023569 Vanilla planifolia HOM05D002472 ORTHO05D002827 5.6e-11 72.4 246 31.7
Lj1g0020326 Lotus japonicus HOM05D002472 ORTHO05D002827 7.3e-11 72.0 228 34.6
Lsat_1_v5_gn_2_65180 Lactuca sativa HOM05D002472 ORTHO05D002827 9.5e-11 71.6 105 38.1
Mapoly0007s0090 Marchantia polymorpha HOM05D002472 ORTHO05D002827 9.5e-11 71.6 109 40.4
TWI36G0925 Tripterygium wilfordii HOM05D002472 ORTHO05D002827 9.5e-11 71.6 225 33.8
AagrBONN_evm.TU.Sc2ySwM_368.470 Anthoceros agrestis HOM05D002472 ORTHO05D002827 1.2e-10 71.2 114 35.1
Carub.0002s0919 Capsella rubella HOM05D002472 ORTHO05D002827 1.2e-10 71.2 102 37.3
Migut.N01929 Erythranthe guttata HOM05D002472 ORTHO05D002827 1.2e-10 71.2 104 38.5
ATR0737G105 Amborella trichopoda HOM05D002472 ORTHO05D002827 1.6e-10 70.9 227 32.6
CSS0020760 Camellia sinensis var. sinensis HOM05D002472 ORTHO05D002827 1.6e-10 70.9 221 34.8
AUR62000974 Chenopodium quinoa HOM05D002472 ORTHO05D002827 1.6e-10 70.9 235 34.9
COL.COLO4_15262 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.6e-10 70.9 104 42.3
RcHm_v2.0_Chr3g0452001 Rosa chinensis HOM05D002472 ORTHO05D002827 1.6e-10 70.9 93 41.9
Sc20g0000230 Simmondsia chinensis HOM05D002472 ORTHO05D002827 1.6e-10 70.9 239 32.6
Aa31LG2G12270 Aethionema arabicum HOM05D002472 ORTHO05D002827 2.1e-10 70.5 239 32.6
COL.COLO4_15281 Corchorus olitorius HOM05D002472 ORTHO05D002827 2.1e-10 70.5 93 44.1
Medtr7g114660 Medicago truncatula HOM05D002472 ORTHO05D002827 2.1e-10 70.5 235 34.0
Peaxi162Scf00404g00027 Petunia axillaris HOM05D002472 ORTHO05D002827 2.1e-10 70.5 91 46.2
Potri.005G049500 Populus trichocarpa HOM05D002472 ORTHO05D002827 2.1e-10 70.5 239 32.2
Dinv17758 Davidia involucrata HOM05D002472 ORTHO05D002827 2.8e-10 70.1 206 33.5
Hund22109 Selenicereus undatus HOM05D002472 ORTHO05D002827 2.8e-10 70.1 236 34.3
BcaC06g31949 Brassica carinata HOM05D002472 ORTHO05D002827 3.6e-10 69.7 135 33.3
BcaC09g50560 Brassica carinata HOM05D002472 ORTHO05D002827 3.6e-10 69.7 102 38.2
A01p18990 Brassica napus HOM05D002472 ORTHO05D002827 3.6e-10 69.7 102 38.2
C01p23920 Brassica napus HOM05D002472 ORTHO05D002827 3.6e-10 69.7 102 38.2
FvH4_6g03520 Fragaria vesca HOM05D002472 ORTHO05D002827 3.6e-10 69.7 106 40.6
FAN09G3215 Fragaria x ananassa HOM05D002472 ORTHO05D002827 3.6e-10 69.7 106 40.6
CiPaw.08G179100 Carya illinoinensis HOM05D002472 ORTHO05D002827 4.7e-10 69.3 237 34.6
Medtr8g465010 Medicago truncatula HOM05D002472 ORTHO05D002827 4.7e-10 69.3 98 42.9
Oeu021635.2 Olea europaea HOM05D002472 ORTHO05D002827 4.7e-10 69.3 244 32.0
ECA238G3450 Erigeron canadensis HOM05D002472 ORTHO05D002827 6.2e-10 68.9 148 35.1
Phvul.006G099600 Phaseolus vulgaris HOM05D002472 ORTHO05D002827 6.2e-10 68.9 233 31.8
Carub.0002s0917 Capsella rubella HOM05D002472 ORTHO05D002827 8.0e-10 68.6 98 38.8
MD12G1236800 Malus domestica HOM05D002472 ORTHO05D002827 8.0e-10 68.6 241 32.4
TAR365G1134 Trochodendron aralioides HOM05D002472 ORTHO05D002827 8.0e-10 68.6 229 34.1
SMO337G0037 Selaginella moellendorffii HOM05D002472 ORTHO05D002827 1.0e-09 68.2 91 41.8
FAN05G1065 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.4e-09 67.8 89 42.7
FAN05G1889 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.4e-09 67.8 111 39.6
FAN05G4665 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.4e-09 67.8 111 39.6
FAN13G1811 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.4e-09 67.8 89 42.7
Manes.09G156400 Manihot esculenta HOM05D002472 ORTHO05D002827 1.4e-09 67.8 222 33.8
RcHm_v2.0_Chr3g0452111 Rosa chinensis HOM05D002472 ORTHO05D002827 1.4e-09 67.8 94 41.5
arahy.Tifrunner.gnm1.ann1.E8NAY1 Arachis hypogaea HOM05D002472 ORTHO05D002827 1.8e-09 67.4 240 32.1
CAN.G134.169 Capsicum annuum HOM05D002472 ORTHO05D002827 1.8e-09 67.4 224 33.5
Ciclev10001390m.g Citrus clementina HOM05D002472 ORTHO05D002827 1.8e-09 67.4 223 31.8
FvH4_6g03510 Fragaria vesca HOM05D002472 ORTHO05D002827 1.8e-09 67.4 147 36.1
Nn4g26312 Nelumbo nucifera HOM05D002472 ORTHO05D002827 1.8e-09 67.4 230 32.6
PSO832G1625 Papaver somniferum HOM05D002472 ORTHO05D002827 1.8e-09 67.4 238 30.7
Zm00001eb053770 Zea mays HOM05D002472 ORTHO05D002827 1.8e-09 67.4 204 32.4
BolC1t02342H Brassica oleracea HOM05D002472 ORTHO05D002827 2.3e-09 67.0 102 37.3
CBR_g11898 Chara braunii HOM05D002472 ORTHO05D002827 2.3e-09 67.0 250 30.8
RcHm_v2.0_Chr3g0452041 Rosa chinensis HOM05D002472 ORTHO05D002827 2.3e-09 67.0 94 43.6
CDE10G0348 Ceratophyllum demersum HOM05D002472 ORTHO05D002827 4.0e-09 66.2 240 31.2
Nitab4.5_0002361g0140 Nicotiana tabacum HOM05D002472 ORTHO05D002827 4.0e-09 66.2 226 32.3
Nitab4.5_0002840g0020 Nicotiana tabacum HOM05D002472 ORTHO05D002827 4.0e-09 66.2 226 32.3
SGA_v2.0_scaffold196G40956 Striga asiatica HOM05D002472 ORTHO05D002827 4.0e-09 66.2 234 34.2
Zm00001eb217000 Zea mays HOM05D002472 ORTHO05D002827 4.0e-09 66.2 209 32.5
Cpa.g.sc264.12 Carica papaya HOM05D002472 ORTHO05D002827 5.2e-09 65.9 236 34.3
DCAR_006611 Daucus carota HOM05D002472 ORTHO05D002827 5.2e-09 65.9 229 32.8
THA.LOC104821125 Tarenaya hassleriana HOM05D002472 ORTHO05D002827 5.2e-09 65.9 227 33.9
Cfa006468 Carpinus fangiana HOM05D002472 ORTHO05D002827 6.8e-09 65.5 233 32.6
PSO832G0752 Papaver somniferum HOM05D002472 ORTHO05D002827 6.8e-09 65.5 239 32.6
Duzib128G0462 Durio zibethinus HOM05D002472 ORTHO05D002827 8.9e-09 65.1 233 32.2
FvH4_5g29750 Fragaria vesca HOM05D002472 ORTHO05D002827 8.9e-09 65.1 93 39.8
FAN18G3852 Fragaria x ananassa HOM05D002472 ORTHO05D002827 8.9e-09 65.1 93 39.8
PSO210G6821 Papaver somniferum HOM05D002472 ORTHO05D002827 8.9e-09 65.1 239 32.6
arahy.Tifrunner.gnm1.ann1.PGP8Y3 Arachis hypogaea HOM05D002472 ORTHO05D002827 1.2e-08 64.7 240 32.1
VMungo0540G0191 Vigna mungo HOM05D002472 ORTHO05D002827 2.0e-08 63.9 233 31.3
MELO3C024679.2 Cucumis melo HOM05D002472 ORTHO05D002827 2.6e-08 63.5 83 42.2
ECA238G3644 Erigeron canadensis HOM05D002472 ORTHO05D002827 2.6e-08 63.5 251 29.5
HanXRQChr10g0295161 Helianthus annuus HOM05D002472 ORTHO05D002827 2.6e-08 63.5 215 33.5
MD04G1220400 Malus domestica HOM05D002472 ORTHO05D002827 2.6e-08 63.5 239 33.5
Solyc01g097860.4 Solanum lycopersicum HOM05D002472 ORTHO05D002827 2.6e-08 63.5 94 40.4
PGSC0003DMG400022472 Solanum tuberosum HOM05D002472 ORTHO05D002827 2.6e-08 63.5 223 34.5
Aqoxy6G02478 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 3.4e-08 63.2 97 38.1
Carub.0002s0918 Capsella rubella HOM05D002472 ORTHO05D002827 4.4e-08 62.8 96 36.5
Pp3c26_130 Physcomitrium patens HOM05D002472 ORTHO05D002827 4.4e-08 62.8 250 29.2
AL1G64960 Arabidopsis lyrata HOM05D002472 ORTHO05D002827 5.8e-08 62.4 229 32.8
EL10Ac4g09186 Beta vulgaris HOM05D002472 ORTHO05D002827 5.8e-08 62.4 229 32.3
FAN09G1451 Fragaria x ananassa HOM05D002472 ORTHO05D002827 5.8e-08 62.4 236 29.2
RcHm_v2.0_Chr3g0452121 Rosa chinensis HOM05D002472 ORTHO05D002827 7.5e-08 62.0 236 31.4
Sopen01g041460 Solanum pennellii HOM05D002472 ORTHO05D002827 9.8e-08 61.6 224 33.0
Carub.0002s0913 Capsella rubella HOM05D002472 ORTHO05D002827 1.3e-07 61.2 231 32.5
Lj7A486G69 Lonicera japonica HOM05D002472 ORTHO05D002827 1.3e-07 61.2 193 33.7
MCO12G238 Micromonas commoda HOM05D002472 ORTHO05D002827 1.3e-07 61.2 93 36.6
Ca_09406_v3 Cicer arietinum L. HOM05D002472 ORTHO05D002827 1.7e-07 60.8 230 31.7
FAN02G1997 Fragaria x ananassa HOM05D002472 ORTHO05D002827 3.7e-07 59.7 222 30.6
Migut.N01931 Erythranthe guttata HOM05D002472 ORTHO05D002827 4.9e-07 59.3 60 46.7
RcHm_v2.0_Chr3g0452011 Rosa chinensis HOM05D002472 ORTHO05D002827 6.4e-07 58.9 227 30.8
Aqoxy6G02480 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 1.1e-06 58.2 126 31.0
AT1G54520 Arabidopsis thaliana HOM05D002472 ORTHO05D002827 1.4e-06 57.8 230 31.3
CARHR055610 Cardamine hirsuta HOM05D002472 ORTHO05D002827 1.9e-06 57.4 229 32.8
FAN09G2813 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.9e-06 57.4 171 31.6
Medtr8g031500 Medicago truncatula HOM05D002472 ORTHO05D002827 1.9e-06 57.4 60 46.7
PRCOL_00000363 Prasinoderma coloniale HOM05D002472 ORTHO05D002827 1.9e-06 57.4 95 36.8
FAN17G2682 Fragaria x ananassa HOM05D002472 ORTHO05D002827 3.2e-06 56.6 125 30.4
AUR62004992 Chenopodium quinoa HOM05D002472 ORTHO05D002827 5.4e-06 55.8 271 30.3
PSO210G6908 Papaver somniferum HOM05D002472 ORTHO05D002827 9.2e-06 55.1 219 30.6


User provided reference genes

Program Settings