Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.2e-112 409.8 205 100.0
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 6.6e-103 377.5 203 93.1
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 8.6e-103 377.1 204 94.6
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 6.6e-95 350.9 208 85.6
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.5e-94 349.7 211 83.9
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.5e-94 349.0 212 83.5
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 2.5e-94 349.0 212 84.9
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.6e-94 347.1 211 83.4
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 6.9e-92 340.9 214 82.7
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.2e-91 340.1 213 83.1
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.2e-91 340.1 212 84.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.6e-91 339.0 210 82.9
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.4e-91 338.2 213 83.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 4.4e-91 338.2 205 83.9
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 9.9e-91 337.0 213 82.2
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.9e-90 335.5 215 81.4
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.9e-90 335.5 209 83.3
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 4.9e-90 334.7 205 83.4
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 6.4e-90 334.3 213 83.1
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.1e-89 333.6 216 81.0
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.4e-89 333.2 212 83.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.9e-89 332.8 213 80.3
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.2e-89 332.0 210 82.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 4.2e-89 331.6 210 81.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 7.1e-89 330.9 215 80.5
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 7.1e-89 330.9 212 79.7
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 7.1e-89 330.9 214 79.9
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.2e-88 330.1 212 81.1
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.2e-88 330.1 210 81.4
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.6e-88 329.7 212 79.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.6e-88 329.7 214 79.9
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 2.7e-88 328.9 212 82.5
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.7e-88 328.9 213 79.3
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.5e-88 328.6 211 79.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.6e-88 328.2 209 80.4
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 4.6e-88 328.2 208 81.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 7.8e-88 327.4 206 82.0
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.0e-87 327.0 212 83.0
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.0e-87 325.5 215 79.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.9e-87 325.1 213 79.3
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.5e-86 323.2 208 78.8
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-86 323.2 213 78.9
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-86 323.2 216 77.3
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-86 322.8 216 77.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.9e-86 322.8 218 76.6
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.9e-86 322.8 210 81.9
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.5e-86 322.4 214 79.4
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 4.3e-86 321.6 217 77.9
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.3e-86 321.6 217 77.9
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.3e-86 321.6 213 77.5
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 4.3e-86 321.6 214 78.5
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 5.6e-86 321.2 211 79.1
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.6e-86 320.5 212 78.8
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.6e-86 320.5 212 78.8
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.6e-86 320.5 213 78.4
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 9.6e-86 320.5 210 79.5
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.3e-85 320.1 218 77.5
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 78.0
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 2.1e-85 319.3 211 78.2
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.8e-85 318.9 216 77.8
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.6e-85 318.5 216 77.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.6e-85 318.5 216 77.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.8e-85 318.2 213 80.8
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 6.2e-85 317.8 212 79.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 6.2e-85 317.8 214 79.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 8.1e-85 317.4 218 76.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 8.1e-85 317.4 210 79.5
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 8.1e-85 317.4 212 76.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 8.1e-85 317.4 216 77.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.1e-84 317.0 213 78.4
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.4e-84 316.6 218 77.5
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 213 79.3
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 213 79.3
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 3.1e-84 315.5 206 76.2
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-84 315.5 216 77.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.1e-84 315.5 213 79.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 4.0e-84 315.1 225 76.4
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.2e-83 313.5 215 78.1
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-83 313.2 203 81.3
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-83 312.8 203 81.3
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-83 312.8 203 81.3
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.4e-83 312.0 203 80.8
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 5.8e-83 311.2 210 79.0
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 5.8e-83 311.2 216 76.4
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 9.9e-83 310.5 224 75.0
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 9.9e-83 310.5 216 76.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 9.9e-83 310.5 212 76.4
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.7e-82 309.7 205 77.6
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.7e-82 309.7 216 77.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.2e-82 309.3 213 77.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.9e-82 308.9 211 75.4
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.9e-81 306.2 210 75.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.2e-81 305.4 203 76.8
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 5.4e-81 304.7 206 76.7
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 7.1e-81 304.3 211 76.3
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.2e-80 303.5 214 74.8
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.2e-80 303.5 215 74.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 3.5e-80 302.0 204 77.5
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.8e-79 299.7 204 75.5
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.9e-79 298.5 193 80.3
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 6.7e-79 297.7 209 73.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.9e-78 296.2 209 72.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 5.6e-78 294.7 206 74.8
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 9.6e-78 293.9 208 75.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.1e-77 292.7 208 73.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.1e-77 292.7 206 74.8
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.8e-77 292.4 204 73.0
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.6e-77 292.0 209 71.8
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.6e-77 292.0 209 71.8
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.8e-77 291.6 207 72.5
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.8e-77 291.6 207 74.4
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.8e-77 291.6 208 71.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.8e-77 291.6 208 71.6
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 6.2e-77 291.2 206 74.8
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 6.2e-77 291.2 210 72.9
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 8.1e-77 290.8 207 73.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-76 290.0 206 73.8
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.8e-76 289.7 190 79.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.4e-76 289.3 210 71.4
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 3.1e-76 288.9 211 72.0
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 3.1e-76 288.9 158 88.6
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.3e-76 288.1 197 76.1
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 5.3e-76 288.1 209 73.7
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 9.0e-76 287.3 207 73.9
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.6e-75 285.8 184 81.5
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.5e-75 285.0 210 73.8
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.5e-75 285.0 210 73.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 3.8e-74 282.0 209 71.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.2e-73 278.5 209 71.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.8e-71 273.1 210 70.5
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.0e-71 272.3 203 69.0
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.1e-70 270.4 146 86.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.5e-70 269.2 152 84.2
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.1e-69 266.2 210 71.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.8e-68 263.1 147 84.4
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 153 83.0
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 158 81.0
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 153 83.0
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 4.0e-68 261.9 215 68.4
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.0e-68 261.9 180 73.3
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 5.3e-68 261.5 198 71.2
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 6.9e-68 261.2 191 70.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.5e-59 233.4 175 70.3
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 7.6e-59 231.1 142 77.5
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 6.5e-58 228.0 176 65.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.0e-55 219.2 212 61.8
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 5.1e-55 218.4 153 69.3
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 6.3e-53 211.5 214 60.3
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.1e-44 181.0 208 52.4
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.4e-41 173.7 92 89.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 9.4e-33 144.4 75 92.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 3.1e-20 102.8 107 57.9
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 7.0e-20 101.7 107 58.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.5e-19 99.4 107 57.9
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.6e-11 73.9 78 53.8
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 1.8e-07 60.5 81 50.6
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 2.0e-06 57.0 97 41.2


User provided reference genes

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