Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.8e-99 365.9 190 100.0
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.8e-86 322.8 190 88.9
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 6.8e-86 320.9 188 87.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.4e-83 313.2 191 86.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.2e-77 293.5 190 79.5
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 5.8e-77 291.2 179 80.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.7e-76 289.7 176 80.1
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 4.9e-76 288.1 172 82.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.3e-76 287.3 185 78.9
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.1e-75 287.0 177 80.2
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 3.2e-75 285.4 182 77.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 4.1e-75 285.0 179 78.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 5.4e-75 284.6 177 81.4
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.2e-74 283.5 173 80.9
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.1e-74 282.7 188 77.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.0e-74 281.2 192 74.5
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.0e-74 281.2 174 78.7
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 6.0e-74 281.2 173 80.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.0e-73 280.4 185 76.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.3e-73 280.0 174 80.5
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.3e-73 280.0 173 79.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.3e-73 279.3 177 76.3
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 5.1e-73 278.1 181 77.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.6e-73 277.7 184 75.0
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.5e-72 276.6 174 80.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 7.3e-72 274.2 177 78.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.2e-71 273.5 160 84.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-71 273.5 173 77.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.1e-71 272.7 185 75.1
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.1e-71 272.7 178 75.8
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.6e-71 271.9 179 76.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 4.7e-71 271.6 173 76.9
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.1e-71 270.8 190 71.6
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.3e-70 269.2 185 75.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.1e-70 268.9 175 75.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 5.2e-70 268.1 178 76.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.8e-70 267.7 190 73.2
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.0e-69 266.2 191 73.3
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 4.4e-69 265.0 170 75.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.4e-69 265.0 200 68.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.8e-69 264.6 185 73.0
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 4.9e-68 261.5 176 75.0
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.1e-67 260.4 168 76.2
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-67 260.0 178 71.9
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.4e-67 259.2 183 72.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.2e-67 258.8 175 73.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-66 256.9 179 73.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.6e-66 256.5 186 71.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.7e-66 255.8 190 72.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.7e-66 255.8 208 64.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.7e-66 255.8 178 70.8
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.0e-66 254.6 161 78.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 6.0e-66 254.6 169 73.4
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 5.1e-65 251.5 175 73.1
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.6e-65 250.8 189 69.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 7.3e-64 247.7 164 74.4
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.6e-64 247.3 178 71.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.1e-63 246.1 175 68.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-63 245.4 189 68.8
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-63 245.4 189 68.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.7e-63 245.0 193 65.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-62 243.4 189 67.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 5.8e-61 238.0 171 69.6
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.3e-60 236.9 235 56.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.8e-60 235.3 177 69.5
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.4e-60 234.6 175 69.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.4e-59 233.4 174 66.7
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.9e-59 233.0 168 72.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 9.3e-59 230.7 174 66.1
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-58 229.9 163 71.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.0e-57 225.7 187 63.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.0e-57 225.7 138 83.3
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.9e-57 225.3 173 68.8
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 3.3e-56 222.2 138 79.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-55 220.3 179 64.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.8e-55 219.2 169 68.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.6e-55 218.8 197 62.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 8.1e-55 217.6 174 65.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-54 216.9 156 69.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 4.0e-54 215.3 127 81.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 5.8e-53 211.5 172 61.6
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 9.9e-53 210.7 172 61.6
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.7e-52 209.9 141 75.9
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.4e-52 207.6 175 58.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.1e-51 207.2 184 57.1
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.4e-51 206.1 177 59.3
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.2e-50 203.8 135 75.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.0e-49 199.1 184 56.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.1e-49 198.4 171 59.6
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 8.7e-49 197.6 184 56.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 8.7e-49 197.6 184 54.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-48 196.8 156 66.0
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.6e-48 194.9 180 56.7
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.8e-47 192.6 183 56.3
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 6.2e-47 191.4 122 77.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 8.1e-47 191.0 157 55.4
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.8e-46 189.9 131 72.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.4e-46 189.5 134 70.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.4e-46 189.5 174 57.5
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 6.9e-46 188.0 184 56.0
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.2e-45 187.2 199 54.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-45 186.4 113 82.3
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.6e-45 186.0 187 55.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.8e-44 182.2 136 68.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 6.4e-44 181.4 184 53.3
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 6.4e-44 181.4 184 54.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 8.4e-44 181.0 180 55.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 8.4e-44 181.0 184 52.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 8.4e-44 181.0 184 52.7
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 3.0e-41 172.6 173 54.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-40 170.2 173 53.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.3e-40 169.1 134 66.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-37 158.7 138 59.4
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 5.8e-37 158.3 133 62.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-36 156.8 120 65.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.1e-35 154.1 164 55.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.2e-34 150.6 188 44.1
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.9e-33 145.6 166 47.6
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 5.1e-33 145.2 185 43.2
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.7e-33 144.4 118 64.4
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.1e-32 144.1 185 44.9
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.5e-32 142.9 145 53.1
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.3e-32 142.1 118 62.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 4.1e-30 135.6 185 40.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.1e-30 135.6 169 45.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 9.0e-30 134.4 176 42.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 9.0e-30 134.4 203 38.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-29 134.0 184 44.6
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 3.4e-29 132.5 178 41.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.9e-29 131.7 186 41.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 5.0e-28 128.6 185 38.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.2e-27 125.6 83 77.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 7.9e-26 121.3 177 37.9
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 7.4e-24 114.8 127 53.5
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.9e-22 108.2 175 37.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 5.9e-21 105.1 129 45.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 4.2e-19 99.0 168 36.9
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.5e-19 98.6 57 86.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.0e-17 94.4 57 82.5
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.4e-17 94.0 57 80.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.3e-17 93.2 63 74.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.5e-16 90.5 85 56.5
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.5e-16 90.5 57 78.9
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-16 89.4 57 77.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.2e-15 86.7 90 53.3
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.7e-12 77.0 67 59.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 5.0e-12 75.5 41 85.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.0e-12 75.5 87 48.3
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 2.3e-09 66.6 52 61.5
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 4.8e-07 58.9 59 49.2


User provided reference genes

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