Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 3.9e-169 598.2 335 100.0
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 9.7e-136 487.3 335 84.5
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 7.9e-122 441.0 384 66.1
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 5.0e-116 421.8 331 73.7
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 6.8e-105 384.8 216 92.6
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 3.7e-95 352.4 242 71.1
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.8e-94 350.1 327 59.0
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.2e-93 347.4 236 73.3
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.2e-93 347.4 324 61.7
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 4.5e-93 345.5 328 58.8
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 4.3e-91 339.0 332 61.4
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 2.1e-90 336.7 320 58.1
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 4.7e-90 335.5 324 61.7
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 8.0e-90 334.7 300 60.7
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 1.8e-89 333.6 333 57.1
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 2.3e-89 333.2 242 70.2
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 2.0e-88 330.1 254 67.7
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 2.6e-88 329.7 248 68.1
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 7.5e-88 328.2 290 60.7
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 9.8e-88 327.8 323 56.3
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 9.8e-88 327.8 251 68.5
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.7e-87 327.0 252 63.9
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.7e-87 327.0 252 63.9
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 2.9e-87 326.2 327 58.1
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 2.9e-87 326.2 237 69.6
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 3.7e-87 325.9 327 56.6
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 3.7e-87 325.9 326 56.1
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 4.9e-87 325.5 326 54.3
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 8.3e-87 324.7 326 54.3
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.4e-86 323.9 326 55.8
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.4e-86 323.9 249 64.7
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.8e-86 323.6 245 66.9
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 2.4e-86 323.2 239 65.7
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 5.4e-86 322.0 249 63.9
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 7.0e-86 321.6 238 67.6
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 9.2e-86 321.2 239 65.3
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 1.2e-85 320.9 247 66.8
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 1.2e-85 320.9 267 64.8
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 2.0e-85 320.1 242 65.3
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 2.7e-85 319.7 244 66.4
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 4.6e-85 318.9 233 67.8
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 1.3e-84 317.4 248 64.9
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 2.3e-84 316.6 251 62.9
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 2.3e-84 316.6 315 54.6
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 5.0e-84 315.5 245 65.7
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 8.6e-84 314.7 245 65.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.1e-83 314.3 248 62.1
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.1e-83 314.3 326 54.9
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.1e-83 314.3 253 65.2
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 4.3e-83 312.4 238 66.0
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 5.6e-83 312.0 257 63.8
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 7.3e-83 311.6 244 66.0
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 9.5e-83 311.2 328 54.9
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 9.5e-83 311.2 239 65.7
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.8e-82 309.7 242 64.5
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 2.8e-82 309.7 242 64.5
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 3.6e-82 309.3 228 68.0
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 4.7e-82 308.9 242 64.5
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 6.2e-82 308.5 243 67.1
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 4.0e-81 305.8 231 65.4
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 6.8e-81 305.1 227 67.0
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.6e-80 303.1 245 64.1
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 7.5e-80 301.6 236 65.3
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.7e-79 300.4 250 62.4
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 4.9e-79 298.9 231 66.7
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 6.4e-79 298.5 251 58.6
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 6.4e-79 298.5 251 58.6
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 6.4e-79 298.5 249 63.5
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 6.4e-79 298.5 237 63.7
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 8.3e-79 298.1 237 62.9
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 3.2e-78 296.2 238 64.3
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 7.0e-78 295.0 259 61.8
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 7.8e-77 291.6 248 63.3
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.0e-76 291.2 242 62.0
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.3e-76 290.8 266 59.0
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 2.3e-76 290.0 234 62.8
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.9e-76 289.3 259 60.2
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 3.9e-76 289.3 333 51.1
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.9e-76 289.3 228 65.8
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 1.9e-75 287.0 238 62.2
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 4.3e-75 285.8 242 59.5
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 4.3e-75 285.8 333 49.8
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.6e-75 285.4 253 58.9
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 9.5e-75 284.6 250 58.8
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 6.2e-74 282.0 241 59.3
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 8.1e-74 281.6 228 63.2
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 8.9e-73 278.1 242 60.3
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 8.9e-73 278.1 239 60.7
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 2.6e-72 276.6 234 60.7
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.8e-72 275.4 303 52.8
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 1.3e-71 274.2 234 60.7
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 1.1e-70 271.2 266 56.4
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.9e-70 270.4 245 56.3
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 3.2e-70 269.6 306 49.7
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 2.1e-69 266.9 253 53.8
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 6.0e-69 265.4 206 63.1
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 8.6e-68 261.5 225 60.0
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.9e-67 260.4 279 51.6
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.4e-65 254.2 230 57.8
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 3.1e-65 253.1 217 59.9
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 7.1e-62 241.9 328 47.6
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.5e-59 234.2 156 74.4
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.9e-59 233.8 200 60.5
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 8.1e-58 228.4 270 47.4
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-55 220.3 232 52.6
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 3.8e-55 219.5 191 59.7
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.1e-52 209.1 213 50.7
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.1e-49 201.4 217 51.2
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 4.5e-48 196.1 149 67.8
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 7.1e-46 188.7 232 47.8
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 9.3e-46 188.3 239 48.1
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 7.9e-45 185.3 232 47.0
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 6.7e-44 182.2 222 44.1
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 7.4e-43 178.7 214 45.8
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 7.4e-43 178.7 214 45.8
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 9.0e-41 171.8 223 44.8
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 1.2e-40 171.4 153 54.9
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.9e-38 164.1 234 44.0
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 1.5e-32 144.4 203 41.9
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 3.3e-27 126.7 211 37.9
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-26 124.0 85 75.3
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.0e-24 117.5 98 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.4e-22 111.3 187 40.1
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.7e-13 79.7 83 54.2
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 5.0e-07 59.7 247 22.7
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 7.2e-06 55.8 159 26.4


User provided reference genes

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