Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 4.1e-69 264.6 134 100.0
Potri.010G096600 Populus trichocarpa HOM05D008627 ORTHO05D010841 5.7e-63 244.2 134 90.3
Sabra10G0069200 Salix brachista HOM05D008627 ORTHO05D010841 7.0e-61 237.3 134 88.8
FAN17G1667 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.1e-53 213.4 136 77.9
FAN07G2611 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.8e-53 212.6 136 77.2
TWI74G0088 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 1.8e-53 212.6 133 78.2
FAN12G2769 Fragaria x ananassa HOM05D008627 ORTHO05D010841 3.1e-53 211.8 136 77.2
Duzib151G0774 Durio zibethinus HOM05D008627 ORTHO05D010841 4.1e-53 211.5 122 84.4
FvH4_4g36570 Fragaria vesca HOM05D008627 ORTHO05D010841 4.1e-53 211.5 136 76.5
Cpa.g.sc953.2 Carica papaya HOM05D008627 ORTHO05D010841 5.4e-53 211.1 127 79.5
Ciclev10032846m.g Citrus clementina HOM05D008627 ORTHO05D010841 7.0e-53 210.7 125 79.2
COL.COLO4_20905 Corchorus olitorius HOM05D008627 ORTHO05D010841 7.0e-53 210.7 125 83.2
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 7.7e-52 207.2 134 76.9
Gohir.D10G133100 Gossypium hirsutum HOM05D008627 ORTHO05D010841 7.7e-52 207.2 125 81.6
RcHm_v2.0_Chr4g0446331 Rosa chinensis HOM05D008627 ORTHO05D010841 7.7e-52 207.2 136 75.0
TWI77G0869 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 1.3e-51 206.5 133 76.7
Gohir.A10G133600 Gossypium hirsutum HOM05D008627 ORTHO05D010841 1.7e-51 206.1 125 80.8
Gorai.011G146800 Gossypium raimondii HOM05D008627 ORTHO05D010841 1.1e-50 203.4 126 81.0
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 1.2e-49 199.9 136 73.5
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 1.4e-48 196.4 135 71.1
HanXRQChr06g0175551 Helianthus annuus HOM05D008627 ORTHO05D010841 2.3e-48 195.7 135 71.9
Prupe.1G344200 Prunus persica HOM05D008627 ORTHO05D010841 1.2e-47 193.4 133 72.9
Lsat_1_v5_gn_0_9181 Lactuca sativa HOM05D008627 ORTHO05D010841 1.5e-47 193.0 131 71.8
FAN22G1733 Fragaria x ananassa HOM05D008627 ORTHO05D010841 2.6e-47 192.2 169 60.9
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 3.4e-47 191.8 121 75.2
MD16G1006400 Malus domestica HOM05D008627 ORTHO05D010841 1.2e-44 183.3 119 76.5
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 1.1e-42 176.8 121 71.1
ATR0618G186 Amborella trichopoda HOM05D008627 ORTHO05D010841 3.3e-42 175.3 123 69.9
CDE05G3193 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 5.6e-42 174.5 124 65.3
HPP92_002493 Vanilla planifolia HOM05D008627 ORTHO05D010841 1.2e-41 173.3 123 65.0
Thecc.04G186000 Theobroma cacao HOM05D008627 ORTHO05D010841 1.5e-39 166.4 98 83.7
PSO017G6499 Papaver somniferum HOM05D008627 ORTHO05D010841 1.7e-35 152.9 121 59.5
PSO478G2256 Papaver somniferum HOM05D008627 ORTHO05D010841 1.7e-35 152.9 120 60.0
AUR62012873 Chenopodium quinoa HOM05D008627 ORTHO05D010841 5.6e-34 147.9 108 68.5
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 4.0e-32 141.7 117 59.8
Pp3c5_20280 Physcomitrium patens HOM05D008627 ORTHO05D010841 6.0e-28 127.9 118 55.1
CDE05G0278 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 5.8e-23 111.3 73 69.9
Prupe.7G051000 Prunus persica HOM05D008627 ORTHO05D010841 3.2e-21 105.5 81 63.0
Dinv20704 Davidia involucrata HOM05D008627 ORTHO05D010841 1.2e-20 103.6 68 72.1
Duzib151G0313 Durio zibethinus HOM05D008627 ORTHO05D010841 2.1e-20 102.8 61 77.0
Prupe.1G083400 Prunus persica HOM05D008627 ORTHO05D010841 7.8e-20 100.9 68 70.6
Prupe.1G114900 Prunus persica HOM05D008627 ORTHO05D010841 7.8e-20 100.9 68 70.6
Prupe.3G229600 Prunus persica HOM05D008627 ORTHO05D010841 5.1e-19 98.2 70 65.7
Hund24318 Selenicereus undatus HOM05D008627 ORTHO05D010841 1.1e-18 97.1 62 80.6
Cre12.g559150 Chlamydomonas reinhardtii HOM05D008627 ORTHO05D010841 4.9e-14 81.6 144 34.0
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 4.7e-09 65.1 127 33.1
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 4.7e-09 65.1 132 33.3
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 1.1e-08 63.9 126 34.1
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.1e-08 63.9 126 32.5
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.4e-08 63.5 123 34.1
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 1.8e-08 63.2 126 32.5
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 1.8e-08 63.2 126 32.5
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 2.4e-08 62.8 126 33.3
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 2.4e-08 62.8 128 32.0
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 2.4e-08 62.8 126 31.0
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 3.1e-08 62.4 125 32.0
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 3.1e-08 62.4 126 32.5
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 3.1e-08 62.4 126 31.0
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 3.1e-08 62.4 126 31.0
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 4.0e-08 62.0 128 30.5
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 6.8e-08 61.2 125 31.2
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 6.8e-08 61.2 122 36.1
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 6.8e-08 61.2 122 36.1
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 6.8e-08 61.2 125 31.2
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 6.8e-08 61.2 126 31.0
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 8.9e-08 60.8 125 29.6
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 8.9e-08 60.8 126 30.2
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 8.9e-08 60.8 132 30.3
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 8.9e-08 60.8 122 32.8
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 8.9e-08 60.8 118 33.1
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 8.9e-08 60.8 122 29.5
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.2e-07 60.5 134 34.3
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.2e-07 60.5 134 34.3
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.2e-07 60.5 128 30.5
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.5e-07 60.1 125 30.4
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.5e-07 60.1 125 30.4
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.5e-07 60.1 116 31.9
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 1.5e-07 60.1 130 33.1
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.5e-07 60.1 129 30.2
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.0e-07 59.7 127 28.3
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 2.0e-07 59.7 119 31.9
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 2.0e-07 59.7 131 29.0
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 2.6e-07 59.3 125 30.4
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 2.6e-07 59.3 125 29.6
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 2.6e-07 59.3 125 29.6
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 2.6e-07 59.3 125 28.8
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 2.6e-07 59.3 126 29.4
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.6e-07 59.3 119 31.9
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 2.6e-07 59.3 122 31.1
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 2.6e-07 59.3 131 31.3
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.4e-07 58.9 127 28.3
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 3.4e-07 58.9 125 29.6
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 3.4e-07 58.9 125 29.6
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 3.4e-07 58.9 122 32.0
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 3.4e-07 58.9 128 30.5
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 3.4e-07 58.9 125 31.2
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 3.4e-07 58.9 122 32.0
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 4.4e-07 58.5 126 30.2
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 4.4e-07 58.5 125 29.6
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 4.4e-07 58.5 125 29.6
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 4.4e-07 58.5 125 29.6
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 4.4e-07 58.5 116 31.0
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 4.4e-07 58.5 116 31.0
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 4.4e-07 58.5 129 31.0
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 4.4e-07 58.5 133 30.8
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 4.4e-07 58.5 136 27.9
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 4.4e-07 58.5 125 28.8
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 5.8e-07 58.2 125 31.2
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 5.8e-07 58.2 129 27.9
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 119 31.9
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 119 31.9
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 5.8e-07 58.2 119 31.9
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 122 32.0
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 122 32.0
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 5.8e-07 58.2 122 32.0
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 5.8e-07 58.2 130 30.0
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 5.8e-07 58.2 126 30.2
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 5.8e-07 58.2 123 31.7
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 118 32.2
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 5.8e-07 58.2 118 32.2
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 5.8e-07 58.2 118 32.2
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 5.8e-07 58.2 130 31.5
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 7.6e-07 57.8 126 29.4
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 7.6e-07 57.8 116 31.0
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 7.6e-07 57.8 125 29.6
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 7.6e-07 57.8 125 29.6
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 7.6e-07 57.8 125 29.6
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 7.6e-07 57.8 125 29.6
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 7.6e-07 57.8 125 31.2
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 7.6e-07 57.8 116 30.2
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 7.6e-07 57.8 118 31.4
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 7.6e-07 57.8 134 29.1
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 7.6e-07 57.8 118 32.2
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 7.6e-07 57.8 123 30.1
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 7.6e-07 57.8 131 33.6
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 7.6e-07 57.8 126 27.8
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 7.6e-07 57.8 130 32.3
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 7.6e-07 57.8 116 31.0
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 7.6e-07 57.8 123 30.1
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 7.6e-07 57.8 130 31.5
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 7.6e-07 57.8 135 29.6
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 9.9e-07 57.4 133 30.1
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 9.9e-07 57.4 116 30.2
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 9.9e-07 57.4 127 29.1
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 9.9e-07 57.4 128 28.9
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 9.9e-07 57.4 126 28.6
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 9.9e-07 57.4 116 31.9
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 9.9e-07 57.4 126 31.0
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 9.9e-07 57.4 126 29.4
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 9.9e-07 57.4 112 31.2
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.3e-06 57.0 122 30.3
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.3e-06 57.0 127 30.7
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 1.3e-06 57.0 117 30.8
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.3e-06 57.0 119 30.3
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.3e-06 57.0 128 28.1
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 1.3e-06 57.0 116 31.9
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 1.7e-06 56.6 120 31.7
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 1.7e-06 56.6 126 26.2
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.2e-06 56.2 120 31.7
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 2.2e-06 56.2 129 28.7
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 2.2e-06 56.2 127 29.1
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 2.2e-06 56.2 116 30.2
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 2.9e-06 55.8 126 29.4
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 2.9e-06 55.8 124 27.4
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 3.8e-06 55.5 124 29.8
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 3.8e-06 55.5 118 29.7
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 4.9e-06 55.1 126 26.2
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 4.9e-06 55.1 124 27.4
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 6.4e-06 54.7 114 29.8
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 8.4e-06 54.3 121 31.4


User provided reference genes

Program Settings