Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.8e-236 822.4 477 100.0
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 4.2e-185 651.7 502 81.3
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 4.0e-143 512.3 423 72.8
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.2e-142 510.8 490 69.0
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 2.9e-141 506.1 422 71.3
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.3e-138 496.5 487 63.2
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 3.0e-138 496.1 488 63.3
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 8.6e-138 494.6 413 70.7
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 2.5e-137 493.0 418 69.1
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 8.1e-136 488.0 475 65.9
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 2.3e-135 486.5 473 66.4
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 6.8e-135 485.0 429 69.5
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 8.9e-135 484.6 434 70.3
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.7e-133 480.3 424 69.6
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 8.4e-133 478.0 483 66.3
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 1.9e-132 476.9 474 65.8
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.9e-132 476.9 416 69.0
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 3.2e-132 476.1 494 64.8
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.4e-132 475.3 416 69.2
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 7.1e-132 474.9 379 73.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.2e-131 474.2 475 65.3
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 6.0e-131 471.9 482 67.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 7.8e-131 471.5 413 67.8
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 7.8e-131 471.5 420 67.6
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.0e-130 471.1 476 64.9
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.9e-130 469.2 417 68.3
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.1e-129 467.6 419 70.4
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 3.3e-129 466.1 422 68.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 3.3e-129 466.1 420 67.6
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 4.3e-129 465.7 479 62.8
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 5.6e-129 465.3 438 65.5
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.6e-129 464.5 434 67.7
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 1.2e-128 464.2 498 64.3
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.6e-128 463.8 416 66.6
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.1e-127 461.1 418 65.8
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 8.9e-127 458.0 420 68.1
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.7e-125 453.8 434 65.2
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 2.2e-125 453.4 488 64.5
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 4.9e-125 452.2 485 60.0
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 8.4e-125 451.4 420 67.1
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.1e-124 451.1 434 64.5
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.9e-124 450.3 420 66.9
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 3.2e-124 449.5 428 62.4
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.2e-124 449.1 417 66.9
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 2.1e-123 446.8 417 66.4
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 6.0e-123 445.3 418 66.0
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 2.3e-122 443.4 413 66.6
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 8.1e-120 434.9 420 65.7
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 8.1e-120 434.9 414 65.0
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 1.1e-119 434.5 419 64.0
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.2e-118 431.0 665 47.1
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.0e-118 430.3 423 65.5
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 2.0e-118 430.3 525 55.4
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 2.6e-118 429.9 383 67.9
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 2.6e-118 429.9 475 62.7
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 2.6e-118 429.9 428 61.0
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 5.8e-118 428.7 431 63.8
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 7.1e-116 421.8 420 63.6
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 2.1e-115 420.2 416 61.5
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.0e-114 417.9 478 59.6
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 6.7e-114 415.2 428 60.3
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.1e-113 414.5 418 62.4
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.9e-113 413.7 401 64.6
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 3.3e-113 412.9 419 63.2
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 4.3e-113 412.5 416 61.3
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 9.6e-113 411.4 419 60.9
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.6e-112 410.6 424 62.3
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 2.1e-112 410.2 426 62.2
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 3.6e-112 409.5 423 62.2
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.8e-112 409.1 417 63.3
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 3.4e-110 402.9 410 63.2
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 7.6e-110 401.7 417 59.5
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 7.6e-110 401.7 412 60.4
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 8.4e-109 398.3 421 61.5
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 8.4e-109 398.3 436 59.4
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 8.4e-109 398.3 436 59.4
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.5e-107 392.9 417 59.2
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 4.6e-107 392.5 419 59.2
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 6.0e-107 392.1 430 60.5
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 7.9e-107 391.7 426 60.6
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 2.3e-106 390.2 434 55.1
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 3.9e-106 389.4 442 55.4
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.1e-105 387.9 481 58.0
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 1.8e-103 380.6 421 59.9
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 3.1e-103 379.8 430 57.2
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.5e-100 370.2 494 55.9
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 4.8e-96 355.9 285 73.7
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.4e-95 354.4 368 60.1
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 2.4e-95 353.6 414 56.0
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 5.0e-93 345.9 346 61.0
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.0e-90 338.2 378 58.2
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.4e-87 327.8 285 69.1
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.4e-87 327.0 286 67.1
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-86 324.3 428 50.5
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-86 324.3 428 50.5
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.0e-85 321.6 385 56.6
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 7.9e-83 312.0 571 45.5
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 7.9e-83 312.0 415 49.2
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 3.0e-82 310.1 424 47.9
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 3.9e-82 309.7 323 60.7
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 3.9e-82 309.7 278 69.1
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.1e-79 300.1 302 63.6
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 6.9e-79 298.9 291 63.9
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 3.6e-75 286.6 424 49.1
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 2.6e-73 280.4 285 62.8
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 2.2e-72 277.3 416 47.8
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 5.5e-68 262.7 350 47.7
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 1.2e-67 261.5 334 55.1
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 6.3e-64 249.2 189 72.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 2.9e-61 240.4 383 47.8
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 8.8e-58 228.8 421 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 2.0e-54 217.6 329 45.0
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 4.7e-51 206.5 258 61.6
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-49 201.4 362 45.9
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 2.8e-43 180.6 479 34.9
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 2.0e-38 164.5 102 83.3
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 5.6e-36 156.4 166 68.7
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 6.2e-35 152.9 199 49.7
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.9e-31 141.4 87 83.9
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 3.2e-31 140.6 371 32.3
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 7.0e-31 139.4 175 58.9
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.7e-30 137.5 119 69.7
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 6.6e-29 132.9 319 40.1
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 4.0e-26 123.6 78 79.5
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.7e-22 110.9 62 83.9
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 1.7e-21 108.2 159 48.4
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.3e-20 103.6 84 76.2
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.8e-18 98.2 79 65.8
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-17 95.1 95 58.9
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.0e-13 80.9 96 53.1
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.9e-13 80.5 63 68.3
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 5.6e-12 76.6 165 47.3
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.0e-10 69.3 87 50.6
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 2.9e-08 64.3 38 76.3
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 4.9e-08 63.5 94 43.6
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 1.1e-07 62.4 171 28.7


User provided reference genes

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