Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 2.7e-230 801.6 392 100.0
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 6.1e-198 694.1 426 82.4
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.2e-150 537.0 381 69.8
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.9e-146 523.1 389 66.6
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 3.3e-143 512.3 376 67.3
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 4.3e-143 511.9 389 65.6
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 7.3e-143 511.1 386 64.8
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 7.3e-143 511.1 375 65.1
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 8.1e-142 507.7 380 66.3
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 7.8e-137 491.1 378 64.6
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.6e-135 484.2 384 64.3
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.3e-134 483.8 380 62.9
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 8.1e-134 481.1 383 64.8
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.0e-133 477.6 384 63.5
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.2e-132 477.2 378 62.4
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.4e-132 475.7 384 63.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 9.9e-132 474.2 384 63.0
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 8.4e-131 471.1 387 61.0
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.1e-130 470.7 379 60.4
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 1.2e-129 467.2 385 60.8
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.2e-129 467.2 391 62.4
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 2.7e-129 466.1 386 63.0
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.0e-128 464.2 386 61.1
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.3e-128 463.8 385 61.3
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-128 462.6 383 60.8
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 3.0e-128 462.6 383 60.8
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 3.0e-128 462.6 386 59.3
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 5.1e-128 461.8 402 57.2
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 6.7e-128 461.5 387 60.2
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 8.7e-128 461.1 381 59.6
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 8.7e-128 461.1 383 62.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.5e-127 460.3 381 62.2
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.9e-127 459.9 385 59.7
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 4.3e-127 458.8 385 60.8
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 4.3e-127 458.8 383 60.6
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 7.4e-127 458.0 385 59.5
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.8e-126 456.1 376 60.9
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.6e-126 455.7 385 60.3
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.8e-126 455.3 387 60.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 4.8e-126 455.3 376 59.3
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 6.2e-126 454.9 393 62.3
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 8.1e-126 454.5 384 60.4
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.8e-125 453.4 377 60.5
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.0e-124 449.9 392 59.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.0e-124 449.9 384 61.5
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 7.6e-124 448.0 392 59.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 9.9e-124 447.6 373 61.1
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.9e-123 446.0 386 58.8
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.1e-122 444.1 376 59.8
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.9e-122 443.4 380 59.2
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.9e-122 443.4 379 57.8
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 9.3e-122 441.0 383 57.2
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 3.5e-121 439.1 381 57.7
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 7.9e-121 438.0 383 57.2
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 3.9e-120 435.6 385 56.6
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 5.1e-120 435.3 370 58.9
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 6.7e-120 434.9 385 58.4
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.1e-119 434.1 428 52.1
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.1e-118 429.9 386 57.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.1e-117 427.6 367 58.3
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.1e-117 427.6 375 58.1
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.1e-117 427.6 386 56.5
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.4e-117 427.2 314 66.2
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.4e-117 427.2 386 56.5
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 2.9e-115 419.5 383 55.4
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 8.4e-115 417.9 338 61.2
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.1e-114 417.5 382 55.8
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.1e-114 417.5 387 56.6
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 4.2e-114 415.6 381 55.4
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 5.5e-114 415.2 336 61.9
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 9.3e-114 414.5 370 60.0
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.3e-112 409.8 383 55.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 9.6e-111 404.4 393 55.2
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.1e-109 401.0 394 55.3
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 5.3e-109 398.7 381 55.4
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 6.9e-109 398.3 381 52.2
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 6.5e-107 391.7 362 57.2
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.5e-106 388.7 386 54.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 2.5e-103 379.8 396 52.5
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.8e-102 375.6 437 47.8
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.2e-97 360.9 402 49.5
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 9.7e-95 351.3 324 55.6
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.8e-94 349.7 311 56.6
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 5.3e-93 345.5 379 48.5
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.3e-91 340.9 324 55.2
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 8.5e-91 338.2 228 71.1
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 3.6e-89 332.8 279 61.6
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.4e-88 330.9 395 46.6
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 2.0e-87 327.0 373 47.7
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.8e-86 323.2 294 54.1
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 2.0e-84 317.0 385 46.5
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 2.0e-84 317.0 325 51.4
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 7.7e-84 315.1 412 46.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 6.3e-78 295.4 460 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.5e-74 282.3 311 48.6
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-67 260.8 268 51.1
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 6.1e-65 252.3 268 50.4
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.8e-64 250.8 277 49.5
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 7.0e-61 238.8 159 67.3
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 8.6e-59 231.9 142 74.6
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 1.2e-55 221.5 296 44.3
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 3.4e-55 219.9 287 44.3
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 7.0e-53 212.2 282 42.9
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.3e-51 208.0 127 73.2
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 4.7e-49 199.5 244 45.1
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 1.5e-47 194.5 111 82.9
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.4e-47 193.4 150 62.0
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 5.4e-45 186.0 122 64.8
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 9.2e-45 185.3 230 46.1
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 3.5e-44 183.3 221 45.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 7.8e-44 182.2 102 74.5
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-43 180.3 112 72.3
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 3.3e-42 176.8 200 46.0
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-38 164.5 92 81.5
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 3.3e-34 150.2 84 82.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 8.1e-25 119.0 111 55.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.7e-22 111.3 130 51.5
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.1e-21 108.6 82 58.5
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-20 105.1 63 76.2
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 1.6e-20 104.8 215 32.6
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-19 100.9 102 46.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-19 100.9 102 46.1
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 6.2e-17 92.8 93 57.0
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 5.3e-16 89.7 60 63.3
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.0e-15 87.8 57 66.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 3.4e-15 87.0 49 71.4
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 2.9e-14 84.0 166 31.3
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 2.9e-14 84.0 166 31.3
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-13 82.0 49 69.4
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 5.4e-13 79.7 49 65.3
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.9e-11 73.6 90 43.3
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 7.4e-10 69.3 73 54.8
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 1.6e-09 68.2 141 30.5
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.3e-06 58.5 222 25.7


User provided reference genes

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