Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.1e-211 738.8 376 100.0
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 1.8e-202 709.1 376 95.7
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 9.0e-199 696.8 376 93.9
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 4.5e-190 667.9 378 89.9
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 3.7e-184 648.3 345 95.1
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 3.6e-179 631.7 377 84.4
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 3.9e-178 628.2 377 85.1
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 1.5e-177 626.3 349 89.4
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.0e-177 625.9 377 84.4
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 4.4e-177 624.8 377 83.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.3e-176 623.2 377 83.0
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.8e-176 622.1 377 82.8
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 3.7e-176 621.7 357 86.3
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 2.4e-175 619.0 376 82.2
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 7.0e-175 617.5 377 82.0
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 7.0e-175 617.5 360 86.1
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 2.0e-174 615.9 357 85.7
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 2.6e-174 615.5 357 84.9
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.5e-174 615.1 377 82.2
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 3.5e-174 615.1 357 84.9
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 4.5e-174 614.8 379 82.1
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 7.7e-174 614.0 372 83.9
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.0e-173 613.6 357 85.4
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.3e-173 613.2 371 84.4
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 2.9e-173 612.1 349 86.5
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 5.0e-173 611.3 376 81.9
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 8.5e-173 610.5 356 86.0
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 1.1e-172 610.1 378 82.8
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.1e-172 610.1 378 81.2
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 1.5e-172 609.8 379 82.3
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 1.9e-172 609.4 376 80.6
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.9e-172 609.4 378 81.0
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 3.2e-172 608.6 379 81.5
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 4.2e-172 608.2 376 81.6
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 5.5e-172 607.8 372 81.7
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 7.2e-172 607.4 376 81.6
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 9.4e-172 607.1 376 81.1
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 9.4e-172 607.1 378 81.5
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.6e-171 606.3 377 81.2
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.6e-171 606.3 347 86.5
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 2.1e-171 605.9 377 81.2
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.7e-171 605.5 351 86.6
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 4.7e-171 604.7 376 80.6
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 1.0e-170 603.6 352 85.5
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.0e-170 603.6 358 85.5
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 1.0e-170 603.6 347 86.2
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.4e-170 603.2 376 80.6
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.8e-170 602.8 376 80.3
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 1.8e-170 602.8 376 80.1
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 1.8e-170 602.8 376 80.3
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 1.8e-170 602.8 360 83.3
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 2.3e-170 602.4 376 80.3
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 3.9e-170 601.7 376 80.3
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.2e-170 601.3 376 80.6
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 6.7e-170 600.9 376 80.6
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 6.7e-170 600.9 376 80.6
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 6.7e-170 600.9 347 86.7
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.1e-169 600.1 347 87.3
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 1.5e-169 599.7 376 80.1
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.5e-169 599.7 378 79.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 2.0e-169 599.4 376 81.6
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 4.4e-169 598.2 376 79.8
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 4.4e-169 598.2 345 86.7
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 4.4e-169 598.2 378 81.5
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 5.7e-169 597.8 360 83.1
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 5.7e-169 597.8 381 80.3
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 5.7e-169 597.8 356 82.9
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 5.7e-169 597.8 356 82.9
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 7.4e-169 597.4 374 81.0
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 1.3e-168 596.7 376 79.5
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.3e-168 596.7 363 81.8
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.3e-168 596.7 350 84.3
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 1.3e-168 596.7 376 79.3
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 345 86.1
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 350 84.3
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 350 84.3
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.7e-168 596.3 350 84.3
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.2e-168 595.9 377 80.1
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 3.7e-168 595.1 376 79.3
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 3.7e-168 595.1 377 80.4
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 4.8e-168 594.7 376 79.3
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 4.8e-168 594.7 376 79.3
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.8e-168 594.7 350 84.0
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 8.2e-168 594.0 347 85.0
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.1e-167 593.6 360 83.1
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.1e-167 593.6 345 84.9
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.1e-167 593.6 376 79.5
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.4e-167 592.4 369 79.9
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 2.4e-167 592.4 380 78.4
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 3.1e-167 592.0 350 84.9
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 3.1e-167 592.0 359 82.5
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 4.1e-167 591.7 346 85.3
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.0e-167 590.9 350 83.4
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 4.5e-166 588.2 381 79.0
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.3e-165 586.6 349 83.7
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.7e-165 586.3 345 83.8
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 3.8e-165 585.1 377 79.6
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 6.5e-165 584.3 349 83.7
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 8.5e-165 583.9 369 80.8
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 8.5e-165 583.9 361 81.4
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.9e-164 582.8 381 78.0
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 2.5e-164 582.4 349 83.4
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 7.2e-164 580.9 350 83.7
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 9.4e-164 580.5 383 78.3
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 2.1e-163 579.3 347 84.1
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 2.1e-163 579.3 367 79.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.1e-163 579.3 399 74.7
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.0e-162 577.0 373 78.8
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 6.8e-162 574.3 378 78.0
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 8.8e-162 573.9 373 78.3
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 2.6e-161 572.4 347 82.4
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 9.1e-159 563.9 322 86.6
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.0e-158 562.8 350 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 1.5e-156 556.6 349 78.5
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 3.0e-154 548.9 347 77.8
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 5.2e-154 548.1 346 80.1
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 3.4e-153 545.4 345 79.1
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 2.2e-152 542.7 351 76.1
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 3.1e-151 538.9 359 78.3
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 4.1e-151 538.5 331 82.5
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 5.4e-151 538.1 350 75.4
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 8.9e-146 520.8 350 76.0
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 4.9e-144 515.0 323 79.3
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 7.0e-143 511.1 296 84.5
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.0e-142 509.6 294 85.4
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 1.3e-141 506.9 338 76.9
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 3.0e-133 479.2 341 71.3
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 9.5e-132 474.2 351 67.0
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.9e-124 449.9 311 74.9
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 4.1e-119 432.2 306 69.9
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 4.6e-110 402.1 225 89.8
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.5e-89 334.0 186 90.9
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 5.8e-89 332.0 188 86.7
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.3e-68 263.1 183 72.1
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.7e-67 259.6 183 71.0
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 4.2e-55 219.5 240 53.8
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 8.8e-53 211.8 170 68.2
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 8.8e-53 211.8 170 68.2
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.6e-52 210.3 138 74.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 9.1e-50 201.8 118 81.4
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 3.5e-49 199.9 118 80.5
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 5.9e-49 199.1 177 60.5
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.7e-49 198.7 125 76.0
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 6.5e-48 195.7 121 76.9
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.0e-36 157.5 97 76.3
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 4.9e-35 152.9 102 73.5
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.9e-33 146.0 146 54.1
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 2.9e-32 143.7 118 68.6
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 6.6e-32 142.5 113 63.7
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.5e-31 141.4 104 68.3
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.6e-30 137.9 102 67.6
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.6e-30 137.9 103 67.0
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.6e-30 137.9 97 72.2
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 2.1e-30 137.5 78 84.6
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.3e-29 134.0 79 82.3
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 8.9e-29 132.1 77 81.8
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 1.5e-28 131.3 88 75.0
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 1.3e-27 128.3 71 85.9
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 2.9e-27 127.1 67 88.1
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 3.2e-26 123.6 72 81.9
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 1.7e-24 117.9 72 80.6
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 4.9e-19 99.8 59 84.7
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 2.3e-16 90.9 81 61.7
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.6e-15 86.3 52 76.9
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 1.1e-13 82.0 57 71.9
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 1.2e-12 78.6 346 24.9
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.3e-08 65.1 40 85.0


User provided reference genes

Program Settings