Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.3e-236 822.8 437 100.0
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 5.8e-197 691.0 404 91.3
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.2e-138 497.3 412 69.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 5.5e-131 471.9 412 66.5
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 6.1e-130 468.4 414 64.5
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 5.1e-129 465.3 412 64.3
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.5e-128 463.0 414 65.9
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.2e-125 454.1 419 63.7
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.5e-125 453.8 412 62.6
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.9e-125 451.8 414 63.3
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.0e-124 451.1 415 62.4
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 9.4e-123 444.5 414 64.3
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 9.4e-123 444.5 414 63.0
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.7e-122 443.0 416 62.0
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 3.6e-122 442.6 435 60.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.0e-121 441.0 418 61.7
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.5e-120 437.2 416 62.7
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.6e-120 436.4 432 60.2
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.4e-118 429.9 468 55.3
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-118 429.9 415 60.2
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 7.7e-117 424.9 412 63.8
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.7e-116 423.7 413 59.6
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 5.0e-116 422.2 418 57.2
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 7.2e-115 418.3 414 60.1
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 7.2e-115 418.3 410 60.5
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.2e-114 417.5 411 59.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 4.7e-114 415.6 416 58.9
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 8.0e-114 414.8 417 58.5
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.8e-113 413.7 415 58.1
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 3.0e-113 412.9 412 59.7
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.0e-112 410.2 417 57.6
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 5.7e-112 408.7 404 59.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.4e-112 408.3 403 58.3
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 7.4e-112 408.3 428 57.5
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.7e-111 407.1 412 59.2
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 4.8e-111 405.6 409 58.2
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 6.3e-111 405.2 409 58.2
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 6.3e-111 405.2 409 58.2
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 1.1e-110 404.4 409 59.9
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.4e-110 404.1 413 57.1
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.1e-110 402.5 405 58.5
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 4.1e-110 402.5 414 57.0
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 9.1e-110 401.4 422 55.7
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 9.1e-110 401.4 417 57.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 2.0e-109 400.2 416 57.2
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.6e-109 399.8 448 55.6
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.5e-109 399.1 416 57.0
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 7.7e-109 398.3 409 55.7
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.3e-108 397.5 407 55.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.3e-108 397.5 413 57.9
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.7e-108 397.1 408 58.1
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.7e-108 397.1 418 59.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.0e-108 395.6 410 57.3
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 8.5e-108 394.8 419 57.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.1e-107 394.4 408 57.6
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.5e-107 394.0 413 57.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.9e-107 393.7 409 56.7
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 3.2e-107 392.9 413 57.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.2e-107 392.9 419 57.3
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 9.4e-107 391.3 415 54.7
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 8.0e-106 388.3 416 57.2
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.4e-105 387.5 406 56.9
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.4e-105 387.5 417 57.3
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 5.2e-105 385.6 412 57.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.8e-105 385.2 419 56.3
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 6.8e-105 385.2 406 56.9
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 5.7e-104 382.1 408 56.9
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.8e-103 379.8 459 51.4
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 4.8e-103 379.0 437 52.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 6.3e-103 378.6 391 58.1
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 6.3e-103 378.6 431 54.8
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.1e-102 377.9 407 56.3
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 5.3e-102 375.6 407 54.3
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 7.0e-102 375.2 402 54.7
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.1e-102 374.8 433 53.8
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 2.0e-101 373.6 419 53.9
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.7e-101 373.2 413 54.7
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 2.7e-101 373.2 336 60.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 3.5e-101 372.9 447 52.3
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.9e-101 372.1 433 54.0
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.2e-100 370.2 433 51.3
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 2.9e-100 369.8 406 55.4
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 5.0e-100 369.0 429 54.3
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.5e-99 367.5 428 54.0
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 2.5e-99 366.7 405 53.6
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.5e-99 365.5 412 52.4
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 4.7e-98 362.5 428 54.2
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.0e-97 361.3 437 48.7
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 2.3e-97 360.1 415 52.0
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 2.3e-97 360.1 421 54.4
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 3.0e-97 359.8 437 51.3
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.8e-97 358.6 404 53.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.7e-95 354.0 403 52.6
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.2e-95 353.6 406 51.0
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.1e-94 351.3 423 50.8
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.1e-94 351.3 405 52.1
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.7e-93 346.7 423 49.4
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.1e-91 341.3 437 49.0
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 4.7e-90 335.9 471 47.1
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 3.7e-87 326.2 431 49.7
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 2.4e-86 323.6 409 49.9
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 3.3e-83 313.2 380 51.6
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.1e-82 310.5 411 48.7
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 7.0e-78 295.4 329 55.6
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.9e-75 287.3 407 45.5
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 9.5e-67 258.5 429 43.8
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 3.6e-66 256.5 321 50.2
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 6.2e-66 255.8 324 50.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 8.9e-65 251.9 361 44.0
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 9.6e-59 231.9 405 37.8
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.6e-53 214.5 404 37.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 5.4e-46 189.5 335 37.3
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 6.0e-45 186.0 160 64.4
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.0e-44 183.7 148 67.6
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.6e-43 179.5 243 44.9
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.8e-42 176.4 243 46.1
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 6.9e-41 172.6 332 41.6
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.0e-41 172.2 407 34.9
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.5e-40 171.4 108 80.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 6.9e-33 146.0 158 46.8
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 6.9e-33 146.0 153 56.2
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 6.9e-33 146.0 160 49.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.2e-30 137.1 149 51.7
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 2.3e-28 131.0 185 50.8
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.9e-28 130.2 114 61.4
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 4.1e-25 120.2 141 51.1
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.6e-21 108.2 193 38.3
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 3.0e-20 104.0 95 53.7
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.6e-13 81.6 248 27.0


User provided reference genes

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