Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.1e-193 679.9 354 100.0
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.1e-177 626.7 415 82.2
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.2e-165 586.6 337 88.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 1.4e-164 583.2 358 83.8
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.7e-162 576.2 360 81.1
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.8e-161 572.8 351 81.8
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.6e-160 569.7 348 83.3
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.0e-160 569.3 354 82.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 4.3e-158 561.6 349 82.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 7.3e-158 560.8 356 81.5
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 2.1e-157 559.3 342 81.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 2.1e-157 559.3 342 81.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 3.6e-157 558.5 351 81.5
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.4e-156 556.6 350 81.4
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 3.1e-156 555.4 356 80.9
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.2e-156 554.7 356 81.2
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 5.2e-156 554.7 350 81.7
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 5.2e-156 554.7 351 82.3
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.2e-155 553.5 338 82.0
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.2e-155 553.5 338 84.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.0e-155 552.7 351 81.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.6e-155 552.4 335 82.7
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.4e-155 552.0 355 81.4
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.8e-155 551.2 351 80.6
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 9.8e-155 550.4 344 82.6
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 9.8e-155 550.4 342 81.0
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.3e-154 550.1 345 82.9
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.7e-154 549.7 356 80.1
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.7e-154 549.7 335 82.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.2e-154 549.3 335 82.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.9e-154 548.9 353 81.9
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.9e-154 548.9 348 81.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.9e-154 548.9 354 80.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.9e-154 548.1 360 78.9
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 4.9e-154 548.1 330 83.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 8.3e-154 547.4 342 82.2
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.4e-153 546.6 344 81.7
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.9e-153 546.2 336 82.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.4e-153 545.8 315 87.3
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 5.4e-153 544.7 323 86.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 9.2e-153 543.9 342 81.9
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.0e-152 542.7 358 78.5
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 3.5e-152 542.0 344 81.1
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 6.0e-152 541.2 350 79.4
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.0e-151 540.4 329 85.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 5.0e-151 538.1 346 80.3
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 6.6e-151 537.7 345 81.2
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 6.6e-151 537.7 345 81.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.1e-150 537.0 345 81.2
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 3.3e-150 535.4 345 80.9
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.3e-150 535.4 344 81.1
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.3e-150 535.0 376 74.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 9.5e-150 533.9 335 80.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.2e-149 533.5 372 74.2
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.1e-149 532.7 336 80.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.6e-149 531.9 338 81.7
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.7e-149 531.6 348 77.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.7e-149 531.6 336 80.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.3e-148 529.3 348 78.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.1e-148 528.9 354 78.0
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.0e-148 528.5 354 78.0
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 5.2e-148 528.1 356 79.2
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 8.9e-148 527.3 348 79.0
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.0e-147 526.2 338 79.3
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.6e-147 525.8 338 79.9
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 4.4e-147 525.0 354 77.7
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.2e-146 522.7 354 77.7
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 3.7e-146 521.9 317 82.6
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 4.9e-146 521.5 356 78.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 8.3e-146 520.8 338 79.0
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 2.7e-144 515.8 311 84.2
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.7e-144 515.8 316 83.9
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.3e-143 513.5 358 75.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.5e-142 509.2 314 82.5
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.6e-142 508.1 311 83.3
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.2e-141 506.9 356 75.0
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.6e-141 505.4 311 83.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.4e-140 503.4 314 82.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.7e-138 496.5 313 79.2
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.9e-138 495.0 313 78.3
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 7.1e-137 491.1 353 72.2
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.6e-136 488.4 385 69.9
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 6.6e-135 484.6 345 76.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.6e-133 479.9 308 79.9
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.6e-133 478.8 330 75.8
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.1e-132 475.7 305 80.3
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.4e-131 472.2 337 74.5
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.8e-131 471.5 405 64.9
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 7.6e-131 471.1 318 78.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 4.9e-130 468.4 303 78.5
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 6.4e-130 468.0 307 77.9
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.1e-129 467.2 287 84.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.5e-126 456.8 355 67.0
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.9e-122 442.6 299 76.3
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 5.4e-121 438.3 339 71.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.2e-120 437.2 347 69.5
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.3e-118 429.1 349 66.2
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.7e-117 425.6 313 69.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.4e-116 423.7 358 64.8
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.9e-113 413.3 302 67.9
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 3.7e-109 399.1 353 61.5
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.8e-108 396.7 242 84.3
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 3.4e-107 392.5 255 77.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.8e-100 370.2 221 83.7
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.6e-96 355.9 217 80.2
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.3e-87 326.6 236 72.5
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.5e-86 323.9 303 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.4e-84 316.6 230 68.7
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.7e-82 310.5 308 56.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.1e-81 307.8 312 53.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 5.5e-81 305.4 192 80.7
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.0e-79 299.7 187 81.8
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.3e-77 294.3 220 68.2
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.2e-69 266.9 166 82.5
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.7e-67 260.0 356 47.2
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.4e-60 235.7 286 49.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.0e-58 229.2 151 76.2
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.5e-57 226.9 160 75.0
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 5.0e-50 202.6 130 74.6
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.8e-48 196.8 242 53.7
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 3.9e-42 176.4 266 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.5e-41 173.7 145 58.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.6e-40 171.0 123 69.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.6e-38 163.7 280 35.7
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.8e-38 162.5 265 40.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 5.8e-38 162.5 110 69.1
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 8.1e-32 142.1 243 42.8
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.9e-31 138.7 85 77.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.3e-29 134.8 101 70.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 2.1e-27 127.5 81 77.8
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 2.5e-25 120.6 74 73.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.5e-19 100.1 114 55.3
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.6e-19 99.8 113 51.3
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 7.8e-19 99.0 88 64.8
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.3e-18 98.2 53 84.9
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-18 98.2 59 88.1
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.3e-18 97.4 60 81.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.6e-17 92.8 62 74.2
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 9.0e-15 85.5 55 70.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.1e-11 74.3 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.3e-09 66.6 58 56.9
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 4.0e-07 60.1 59 59.3
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 9.9e-06 55.5 34 76.5


User provided reference genes

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