Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G128301 Populus trichocarpa HOM05D003281 ORTHO05D004128 2.4e-43 178.3 84 100.0
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 8.6e-17 90.1 46 89.1
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 1.9e-16 89.0 46 89.1
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 5.6e-16 87.4 46 87.0
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 7.3e-16 87.0 46 84.8
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 87.0
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 9.5e-16 86.7 46 84.8
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 1.2e-15 86.3 46 82.6
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.2e-15 86.3 45 86.7
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 1.2e-15 86.3 46 82.6
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.2e-15 86.3 46 87.0
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 87.0
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 87.0
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 84.8
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.6e-15 85.9 47 83.0
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 84.8
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 84.8
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 1.6e-15 85.9 46 87.0
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 87.0
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 82.6
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 87.0
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 87.0
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 82.6
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 84.8
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 2.1e-15 85.5 46 82.6
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 80.4
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 2.8e-15 85.1 46 82.6
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 3.6e-15 84.7 46 82.6
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 3.6e-15 84.7 46 82.6
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 4.7e-15 84.3 46 82.6
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.7e-15 84.3 46 84.8
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 4.7e-15 84.3 46 80.4
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 4.7e-15 84.3 46 80.4
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 84.8
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 84.8
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 82.6
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 82.6
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 82.6
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 84.8
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 80.4
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.2e-15 84.0 45 84.4
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 6.2e-15 84.0 46 82.6
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 82.6
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 82.6
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 78.3
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 80.4
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 80.4
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 82.6
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 84.8
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 8.1e-15 83.6 46 84.8
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 80.4
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 78.3
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 84.8
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 84.8
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 82.6
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 84.8
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.1e-14 83.2 46 82.6
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 80.4
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 80.4
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 80.4
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 80.4
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 80.4
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.4e-14 82.8 46 84.8
unitig_46.g18255 Utricularia gibba HOM05D000840 ORTHO05D000670 1.4e-14 82.8 63 63.5
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 1.8e-14 82.4 46 80.4
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.8e-14 82.4 46 80.4
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.8e-14 82.4 46 80.4
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.8e-14 82.4 46 80.4
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 1.8e-14 82.4 46 82.6
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 80.4
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 82.6
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 82.6
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 2.4e-14 82.0 46 82.6
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.4e-14 82.0 47 76.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.4e-14 82.0 47 76.6
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 3.1e-14 81.6 46 78.3
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 3.1e-14 81.6 46 78.3
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 3.1e-14 81.6 46 78.3
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 3.1e-14 81.6 46 78.3
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 4.0e-14 81.3 46 80.4
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 5.2e-14 80.9 46 80.4
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 5.2e-14 80.9 46 80.4
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 5.2e-14 80.9 46 82.6
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 6.8e-14 80.5 46 78.3
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 8.9e-14 80.1 46 76.1
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 8.9e-14 80.1 46 76.1
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.2e-13 79.7 46 78.3
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.2e-13 79.7 46 82.6
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 1.2e-13 79.7 46 76.1
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.5e-13 79.3 46 76.1
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.5e-13 79.3 46 76.1
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 1.5e-13 79.3 46 76.1
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 2.0e-13 79.0 46 78.3
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 2.0e-13 79.0 46 78.3
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 2.0e-13 79.0 46 73.9
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.6e-13 78.6 46 78.3
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 3.4e-13 78.2 41 85.4
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 3.4e-13 78.2 46 73.9
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.4e-13 77.8 46 82.6
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 4.4e-13 77.8 46 78.3
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 9.9e-13 76.6 42 83.3
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 1.7e-12 75.9 46 71.7
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 8.4e-12 73.6 40 82.5
BcaC02g07739 Brassica carinata HOM05D003281 ORTHO05D004128 1.1e-11 73.2 47 72.3
BolC4t27890H Brassica oleracea HOM05D003281 ORTHO05D032323 1.1e-11 73.2 47 72.3
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.4e-11 72.8 46 67.4
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 2.4e-11 72.0 46 65.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.2e-10 69.7 41 75.6
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 3.5e-10 68.2 44 68.2
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 6.0e-10 67.4 35 85.7
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.0e-09 66.6 38 81.6
MD12G1088800 Malus domestica HOM05D003281 ORTHO05D004128 3.0e-09 65.1 43 72.1
A04p26700 Brassica napus HOM05D003281 ORTHO05D032323 5.1e-09 64.3 38 76.3
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 6.6e-09 63.9 46 63.0


User provided reference genes

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