Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.0e-155 551.2 309 100.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-127 458.8 257 91.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.0e-124 448.0 284 83.5
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.1e-116 422.9 280 81.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 5.8e-103 378.3 278 76.3
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 5.5e-101 371.7 290 69.0
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.2e-100 370.5 285 70.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.6e-100 370.2 290 68.6
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 6.0e-100 368.2 282 70.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.9e-99 365.5 289 67.8
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.9e-99 365.5 289 67.8
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 7.4e-98 361.3 287 67.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 7.4e-98 361.3 279 68.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.3e-97 360.5 285 67.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.1e-97 359.8 275 69.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.8e-97 359.4 284 66.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.7e-97 359.0 280 67.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.8e-97 358.6 285 66.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.1e-96 357.5 275 68.4
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-96 357.5 275 68.4
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.1e-96 357.5 284 65.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 5.3e-96 355.1 284 64.4
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-95 353.6 275 68.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.6e-95 352.8 303 64.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 3.4e-95 352.4 275 68.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 5.8e-95 351.7 295 65.4
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 7.6e-95 351.3 296 66.2
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-95 351.3 275 67.6
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.0e-94 350.9 285 66.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 6.5e-94 348.2 278 71.6
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.9e-93 346.7 287 64.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.3e-91 340.5 276 66.3
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.0e-91 339.3 293 63.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 3.9e-91 339.0 282 64.9
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 4.3e-90 335.5 294 65.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.3e-90 335.5 283 62.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 5.7e-90 335.1 285 63.9
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.8e-89 332.0 275 66.2
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 8.2e-89 331.3 287 62.7
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.1e-88 330.9 285 62.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 9.0e-88 327.8 295 61.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.0e-86 322.0 283 61.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.6e-84 317.0 283 63.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.3e-81 307.4 284 60.2
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-80 303.1 277 61.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.2e-79 300.8 290 59.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 4.5e-79 298.9 275 60.7
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.2e-77 291.6 276 58.7
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.7e-75 285.0 279 58.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.1e-74 284.3 303 54.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.5e-74 283.9 289 57.1
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.0e-74 283.5 276 58.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.0e-74 283.5 290 55.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.0e-74 283.5 279 58.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.6e-74 283.1 281 55.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.3e-73 280.8 304 53.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.7e-73 279.3 295 54.2
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.8e-73 278.9 284 55.6
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.2e-73 278.1 282 56.0
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.2e-73 278.1 244 62.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-72 277.7 284 55.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.4e-72 276.6 294 55.8
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-72 276.6 313 52.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-72 276.6 313 52.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.4e-72 276.6 292 56.5
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.1e-72 275.8 285 56.1
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.2e-71 274.2 278 56.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-71 274.2 279 57.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.6e-71 273.9 281 56.6
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.0e-71 273.5 290 55.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.6e-71 273.1 289 55.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 4.5e-71 272.3 290 55.5
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 4.5e-71 272.3 290 54.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.3e-70 270.8 324 56.5
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-70 270.8 272 58.1
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.9e-70 269.6 278 56.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-69 267.7 288 54.2
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.9e-69 266.9 279 54.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.5e-69 266.5 289 54.3
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 4.2e-69 265.8 283 54.8
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.5e-69 265.4 279 55.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 7.2e-69 265.0 291 53.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 7.2e-69 265.0 288 53.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.1e-68 263.5 266 55.6
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 6.1e-68 261.9 290 53.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.3e-67 260.0 289 55.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.3e-67 260.0 313 50.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.0e-67 259.6 322 54.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.0e-67 259.2 277 56.3
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.5e-66 257.3 286 52.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.6e-66 256.5 289 53.3
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.3e-66 256.1 283 56.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 4.4e-66 255.8 299 51.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.3e-65 254.2 278 55.0
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.1e-64 249.6 230 59.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 4.1e-64 249.2 270 51.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 5.3e-64 248.8 288 49.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 7.0e-64 248.4 279 52.7
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-63 247.7 307 50.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.5e-63 245.7 250 58.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.9e-63 245.4 278 51.1
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.0e-62 244.6 292 51.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.0e-62 244.6 277 53.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.7e-62 243.8 298 49.7
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.5e-62 241.9 260 54.2
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 8.5e-62 241.5 290 51.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.9e-61 240.4 272 52.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.5e-61 240.0 269 53.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 7.2e-61 238.4 282 53.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 9.4e-61 238.0 299 49.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 9.4e-61 238.0 282 52.1
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.1e-60 236.9 271 53.1
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.7e-60 236.5 285 48.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 8.0e-60 235.0 246 54.9
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.3e-59 233.4 298 49.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.0e-58 230.3 270 51.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.7e-57 227.3 325 44.0
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 6.3e-57 225.3 301 47.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.2e-55 221.1 285 49.8
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.5e-55 219.2 291 46.7
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 7.7e-55 218.4 285 50.9
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.0e-54 218.0 275 52.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.0e-54 215.7 200 56.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-52 210.3 231 52.4
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.2e-50 204.5 275 47.6
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.4e-50 203.0 217 53.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.4e-50 202.6 217 53.9
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.3e-49 198.7 287 44.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.1e-48 198.0 141 70.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.8e-48 197.2 279 45.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.0e-47 193.7 277 45.1
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 5.9e-47 192.2 163 63.2
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.0e-46 191.4 285 43.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.6e-46 188.7 160 62.5
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.1e-44 182.2 124 69.4
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 9.8e-42 174.9 277 45.1
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-41 173.3 156 59.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.1e-40 171.4 174 51.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.4e-40 170.2 275 42.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.2e-39 167.9 282 42.6
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.0e-38 162.5 129 62.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-35 154.8 137 63.5
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 6.8e-35 152.1 135 56.3
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.5e-34 151.0 230 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.0e-34 150.6 121 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.0e-34 150.6 121 59.5
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 5.8e-34 149.1 132 64.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.3e-33 147.9 212 43.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.4e-32 142.5 275 38.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.2e-31 141.4 111 58.6
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 4.3e-29 132.9 261 37.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 3.6e-28 129.8 72 83.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.2e-24 116.7 195 37.9
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.5e-23 113.2 163 46.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 6.0e-15 85.9 108 51.9
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.3e-14 84.7 148 39.9
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-13 81.6 55 67.3
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.9e-13 80.9 147 42.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.3e-13 79.0 135 45.2
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 9.6e-13 78.6 55 76.4
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 7.6e-10 68.9 110 41.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.9e-10 68.6 43 67.4
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 3.0e-06 57.0 36 69.4


User provided reference genes

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