Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.4e-49 198.0 98 100.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 6.9e-42 173.7 92 90.2
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 3.8e-32 141.4 90 75.6
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.8e-32 141.4 88 73.9
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.6e-30 136.0 83 77.1
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.6e-30 134.8 87 71.3
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.6e-30 134.8 92 68.5
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.4e-28 127.9 78 76.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 7.4e-28 127.1 86 69.8
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.7e-27 125.9 70 81.4
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.2e-27 125.6 92 62.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 2.2e-27 125.6 81 72.8
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.8e-27 124.4 82 68.3
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.1e-26 123.2 78 70.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.1e-26 123.2 71 78.9
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 3.1e-26 121.7 78 70.5
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 3.1e-26 121.7 85 68.2
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.1e-26 121.7 87 65.5
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 9.1e-26 120.2 88 62.5
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 9.1e-26 120.2 78 69.2
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 9.1e-26 120.2 74 75.7
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.2e-25 119.8 82 63.4
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-25 119.8 86 64.0
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.2e-25 119.8 85 65.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.5e-25 119.4 77 70.1
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-25 119.4 79 68.4
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.5e-25 119.4 81 67.9
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.0e-25 119.0 75 70.7
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.0e-25 119.0 82 67.1
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.6e-25 118.6 81 64.2
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.5e-25 118.2 78 66.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.5e-25 118.2 78 66.7
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 4.5e-25 117.9 83 65.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.5e-25 117.9 78 70.5
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.5e-25 117.9 83 68.7
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 7.7e-25 117.1 83 65.1
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 7.7e-25 117.1 83 65.1
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 7.7e-25 117.1 73 68.5
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 7.7e-25 117.1 81 64.2
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.0e-24 116.7 69 76.8
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.3e-24 116.3 69 73.9
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.2e-24 115.5 71 73.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.2e-24 115.5 83 66.3
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.9e-24 115.2 81 65.4
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-24 115.2 78 65.4
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.9e-24 115.2 83 65.1
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 3.8e-24 114.8 88 63.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.8e-24 114.8 87 60.9
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 5.0e-24 114.4 77 66.2
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 8.5e-24 113.6 78 65.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 8.5e-24 113.6 76 69.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 8.5e-24 113.6 80 67.5
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 8.5e-24 113.6 78 67.9
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 8.5e-24 113.6 76 71.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.1e-23 113.2 82 64.6
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.5e-23 112.8 87 60.9
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 2.5e-23 112.1 70 72.9
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 2.5e-23 112.1 83 65.1
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 3.2e-23 111.7 78 62.8
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.2e-23 111.7 79 69.6
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 4.2e-23 111.3 77 66.2
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 4.2e-23 111.3 80 62.5
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 5.5e-23 110.9 80 65.0
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 7.2e-23 110.5 77 64.9
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 9.4e-23 110.2 80 63.8
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.2e-22 109.8 77 66.2
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-22 109.4 79 68.4
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 3.6e-22 108.2 82 63.4
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 4.7e-22 107.8 77 66.2
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 4.7e-22 107.8 79 62.0
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 6.1e-22 107.5 81 63.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.0e-22 107.1 75 64.0
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.0e-22 107.1 78 66.7
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-21 106.7 81 59.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.4e-21 106.3 74 67.6
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.8e-21 105.9 66 72.7
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 1.8e-21 105.9 72 66.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-21 105.5 86 55.8
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-21 105.5 92 54.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-21 105.5 92 54.3
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.3e-21 105.5 72 65.3
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.0e-21 105.1 80 58.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.0e-21 105.1 80 58.8
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.0e-21 105.1 80 58.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.0e-21 105.1 74 60.8
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.0e-21 105.1 85 63.5
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 4.0e-21 104.8 74 64.9
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 6.7e-21 104.0 81 59.3
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.7e-21 104.0 85 57.6
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 8.8e-21 103.6 68 69.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 1.1e-20 103.2 86 57.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.0e-20 102.4 69 68.1
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.3e-20 101.7 79 58.2
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 4.4e-20 101.3 72 62.5
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 5.7e-20 100.9 69 66.7
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 5.7e-20 100.9 86 54.7
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 9.7e-20 100.1 72 63.9
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.3e-19 99.8 87 54.0
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-19 99.8 76 63.2
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.8e-19 98.6 85 54.1
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 4.8e-19 97.8 79 55.7
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 4.8e-19 97.8 78 56.4
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 8.2e-19 97.1 73 63.0
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 8.2e-19 97.1 83 55.4
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.1e-18 96.7 83 56.6
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.4e-18 96.3 68 64.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.8e-18 95.9 68 67.6
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.4e-18 95.5 80 56.2
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.1e-18 95.1 79 57.0
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.1e-18 95.1 79 57.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 4.1e-18 94.7 72 59.7
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 7.0e-18 94.0 67 62.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.5e-17 91.3 67 67.2
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.8e-16 88.2 76 53.9
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.8e-16 88.2 76 53.9
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.1e-15 86.7 68 57.4
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.9e-15 85.9 77 51.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 3.6e-14 81.6 78 48.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 6.1e-14 80.9 54 68.5
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 6.8e-13 77.4 54 68.5
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-11 73.2 44 72.7
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 3.7e-11 71.6 49 65.3
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.1e-10 70.1 64 54.7
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 4.1e-10 68.2 46 65.2
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.9e-09 64.3 54 59.3
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-08 63.2 71 45.1
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.0e-08 61.2 58 53.4
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.5e-08 60.5 55 56.4
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.5e-07 59.7 39 69.2
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 1.6e-06 56.2 39 64.1
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 2.1e-06 55.8 78 33.3


User provided reference genes

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