Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.0e-130 467.2 225 100.0
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.0e-56 224.2 158 67.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 3.9e-56 222.2 158 66.5
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 6.6e-56 221.5 141 70.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 8.7e-56 221.1 139 69.8
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.1e-55 220.7 134 71.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-55 220.7 137 70.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.9e-55 219.9 136 72.8
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.9e-55 219.9 136 71.3
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.6e-55 218.4 140 71.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 7.4e-55 218.0 141 69.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.6e-54 216.9 138 71.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 2.8e-54 216.1 143 69.2
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.1e-53 214.2 147 66.7
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.4e-53 213.0 137 70.1
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 6.9e-53 211.5 137 66.4
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.9e-53 211.5 137 66.4
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 9.0e-53 211.1 133 69.2
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.0e-53 211.1 137 66.4
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 4.5e-52 208.8 141 64.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 4.5e-52 208.8 143 65.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.8e-52 208.4 135 65.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-52 208.4 137 65.7
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 9.9e-52 207.6 138 69.6
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.3e-51 207.2 136 66.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-51 207.2 146 65.1
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.7e-51 206.8 135 64.4
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.2e-51 206.5 135 64.4
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.2e-51 206.5 137 72.3
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 2.9e-51 206.1 137 67.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 2.9e-51 206.1 137 67.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 4.9e-51 205.3 135 66.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 6.4e-51 204.9 136 67.6
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 8.4e-51 204.5 149 62.4
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.1e-50 204.1 132 67.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.1e-50 204.1 138 63.0
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.9e-50 203.4 135 65.9
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.9e-50 203.4 134 65.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.4e-50 203.0 135 65.9
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.4e-50 203.0 136 66.2
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.4e-50 203.0 136 66.2
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-50 203.0 138 67.4
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.2e-50 202.6 137 65.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 5.5e-50 201.8 135 65.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.5e-50 201.8 141 62.4
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 5.5e-50 201.8 134 68.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 9.3e-50 201.1 149 60.4
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 9.3e-50 201.1 143 62.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.2e-49 200.7 132 67.4
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.1e-49 199.9 135 65.2
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.7e-49 199.5 146 62.3
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-49 199.5 136 67.6
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.6e-49 198.7 136 67.6
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 4.6e-49 198.7 134 66.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 6.0e-49 198.4 130 70.0
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 6.0e-49 198.4 141 63.8
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.0e-49 198.4 141 63.8
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 7.9e-49 198.0 134 64.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 7.9e-49 198.0 145 62.1
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-48 197.6 133 65.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-48 197.6 133 65.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-48 197.6 133 65.4
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-48 196.8 138 64.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-48 196.8 138 64.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.8e-48 196.8 146 60.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.8e-48 196.8 136 64.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.3e-48 196.4 224 46.4
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.3e-48 196.4 145 57.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.3e-48 196.4 136 62.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.9e-48 195.7 138 64.5
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 5.1e-48 195.3 138 64.5
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 5.1e-48 195.3 132 63.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.1e-48 195.3 140 63.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.1e-48 195.3 132 63.6
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 5.1e-48 195.3 140 64.3
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.7e-48 194.9 151 55.0
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 6.7e-48 194.9 134 67.9
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 6.7e-48 194.9 133 63.9
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.7e-48 194.9 134 61.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 8.7e-48 194.5 135 61.5
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.7e-48 194.5 137 61.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.7e-48 194.5 137 61.3
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.7e-48 194.5 140 65.0
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-47 193.7 138 63.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-47 193.7 138 63.0
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.5e-47 193.0 139 62.6
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 4.3e-47 192.2 141 64.5
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.3e-47 192.2 141 64.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 7.4e-47 191.4 138 63.8
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 7.4e-47 191.4 139 64.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.4e-47 191.4 136 64.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 9.6e-47 191.0 127 67.7
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.6e-46 190.3 138 62.3
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.1e-46 189.9 134 61.2
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.8e-46 189.5 135 60.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.8e-46 189.5 142 59.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.7e-46 189.1 140 64.3
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.8e-46 188.7 139 63.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.8e-46 188.7 139 63.3
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 4.8e-46 188.7 138 62.3
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.2e-46 188.3 136 63.2
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.1e-46 188.0 137 62.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-45 187.2 137 62.8
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-45 187.2 137 62.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.8e-45 186.8 134 61.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.8e-45 186.8 134 59.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.8e-45 186.8 136 62.5
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.4e-45 186.4 141 61.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 3.1e-45 186.0 136 62.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.3e-45 185.3 138 60.9
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 9.0e-45 184.5 138 63.8
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.2e-44 184.1 138 62.3
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.0e-44 183.3 137 61.3
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.6e-44 183.0 136 58.8
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.4e-44 182.6 136 59.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 5.8e-44 181.8 142 61.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 7.6e-44 181.4 138 56.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.3e-43 180.6 140 55.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.3e-43 180.6 140 55.7
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-43 180.3 136 64.0
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.9e-43 179.5 136 60.3
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.9e-42 176.8 150 57.3
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 7.1e-42 174.9 138 57.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 7.1e-42 174.9 140 59.3
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.6e-41 173.7 130 60.0
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.1e-41 173.3 139 55.4
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.5e-41 172.6 139 58.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.3e-40 170.6 139 54.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.8e-40 170.2 133 54.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.3e-40 169.9 137 59.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-39 167.5 145 54.5
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 7.4e-39 164.9 140 57.1
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 3.7e-38 162.5 115 67.8
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.8e-38 162.2 199 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 8.2e-38 161.4 138 52.9
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.1e-37 161.0 138 52.9
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-37 160.6 98 68.4
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 3.1e-37 159.5 144 55.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.2e-36 157.5 133 56.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-36 157.1 139 55.4
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.0e-36 156.8 136 53.7
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.6e-36 156.4 137 57.7
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 7.6e-36 154.8 137 47.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 8.4e-35 151.4 133 56.4
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.6e-33 145.6 97 64.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 7.9e-33 144.8 113 61.9
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.9e-31 140.2 136 48.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 4.3e-31 139.0 138 50.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-30 136.3 138 50.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.3e-30 135.2 147 43.5
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 6.9e-29 131.7 137 48.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.5e-28 129.0 134 47.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.1e-25 120.2 131 49.6
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.7e-23 111.3 102 55.9
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.2e-22 108.2 116 47.4
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.0e-19 101.3 131 42.7
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.2e-19 100.1 75 62.7
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.9e-18 97.1 131 38.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.2e-18 95.9 72 52.8
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.2e-18 95.9 50 72.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.6e-17 92.8 50 70.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-15 87.0 67 65.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.7e-14 84.0 66 60.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.8e-14 83.2 105 43.8
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 8.2e-14 81.6 63 63.5
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 8.2e-14 81.6 137 43.1
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-13 80.5 62 61.3
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.2e-11 73.6 40 65.0


User provided reference genes

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