Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.7e-205 717.2 388 100.0
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.9e-204 715.7 388 99.7
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.2e-175 618.6 388 88.4
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.4e-167 593.2 394 84.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.0e-149 533.9 329 86.9
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 4.1e-130 468.8 390 69.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 5.8e-124 448.4 390 71.3
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 2.4e-114 416.4 410 63.2
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 9.2e-114 414.5 402 60.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 7.6e-108 394.8 413 60.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 7.1e-106 388.3 414 58.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.6e-105 387.1 401 61.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.6e-105 385.6 401 58.6
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 7.8e-105 384.8 419 57.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 7.8e-105 384.8 419 57.0
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.9e-103 380.2 431 56.4
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.1e-101 374.4 405 60.2
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.9e-101 371.7 415 56.4
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.6e-100 369.8 396 57.8
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.7e-99 367.1 403 56.1
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.4e-99 365.2 403 54.6
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 3.2e-98 362.8 414 58.0
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 3.5e-97 359.4 408 55.6
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-95 354.4 421 53.4
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.3e-95 351.7 413 56.7
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.6e-95 351.3 412 56.3
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.6e-94 350.5 404 58.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.2e-94 348.6 414 56.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.4e-90 337.4 397 55.2
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 2.1e-89 333.6 393 55.0
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.9e-88 329.3 431 50.6
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.9e-85 318.5 407 52.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.5e-84 317.4 389 54.2
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.6e-84 316.6 390 51.3
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.4e-82 310.8 397 52.1
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.6e-81 307.4 403 49.1
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 7.9e-81 305.1 421 48.7
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.5e-79 300.1 418 50.7
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.3e-79 299.3 414 50.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.7e-79 298.9 421 49.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.8e-78 296.6 341 51.9
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-78 296.2 422 49.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.8e-78 295.8 422 50.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 6.2e-78 295.4 422 49.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.1e-77 294.7 386 48.7
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 9.0e-77 291.6 376 53.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.0e-75 288.1 403 48.6
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.2e-75 287.0 424 46.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.2e-75 287.0 428 45.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.2e-74 283.1 415 52.0
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.2e-74 283.1 415 52.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.7e-72 275.0 389 48.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-71 274.6 390 48.2
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-71 274.6 390 48.2
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 5.7e-71 272.3 438 48.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 2.2e-70 270.4 423 44.9
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.1e-69 266.2 411 52.6
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.0e-68 263.8 390 46.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.7e-67 260.8 394 45.4
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.5e-66 256.9 397 45.3
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.2e-65 254.6 436 46.1
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 3.6e-65 253.1 402 47.3
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.3e-64 250.4 242 58.7
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-63 247.7 403 42.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.0e-63 247.3 413 46.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.2e-62 243.8 402 42.5
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.3e-61 239.2 397 45.8
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 5.3e-61 239.2 315 50.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 5.9e-60 235.7 254 56.7
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.0e-59 235.0 400 46.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.1e-57 227.3 393 39.2
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.6e-57 226.5 389 39.6
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.6e-57 226.5 389 39.6
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.1e-56 222.6 428 40.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.1e-56 222.6 395 40.0
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 6.7e-56 222.2 384 39.3
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 6.3e-54 215.7 382 39.3
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.1e-53 214.9 404 44.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 9.1e-53 211.8 410 40.7
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.2e-52 211.5 394 39.8
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.0e-51 208.4 401 38.4
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 2.2e-51 207.2 405 44.0
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 6.5e-51 205.7 390 42.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 8.5e-51 205.3 413 42.9
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-49 201.4 396 42.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.1e-49 200.7 383 41.3
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 4.7e-49 199.5 423 37.6
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 8.0e-49 198.7 403 41.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 3.9e-48 196.4 383 40.7
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 5.2e-48 196.1 396 42.4
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.7e-47 192.6 478 39.7
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.2e-46 190.7 483 37.9
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.1e-45 186.8 397 43.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 3.5e-44 183.3 488 37.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 4.2e-42 176.4 396 36.4
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 4.2e-42 176.4 391 40.9
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 4.2e-42 176.4 391 40.9
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 5.2e-40 169.5 390 38.5
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 6.8e-40 169.1 383 37.9
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.7e-38 164.5 402 37.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 4.8e-38 162.9 380 36.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 5.9e-36 156.0 409 34.5
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 5.0e-35 152.9 447 33.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-34 151.4 398 37.2
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-34 151.4 398 37.2
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-34 151.0 415 34.9
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.1e-33 147.5 391 37.3
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.7e-33 146.4 421 33.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 8.0e-33 145.6 434 32.9
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.4e-32 144.8 382 36.9
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.3e-32 144.1 453 34.7
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 6.8e-32 142.5 479 34.2
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.4e-31 140.2 404 36.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 5.7e-31 139.4 129 59.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.8e-31 138.7 396 33.6
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 9.8e-31 138.7 396 33.6
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.3e-30 138.3 396 34.3
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.7e-30 136.7 268 42.9
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 6.3e-30 136.0 464 32.5
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.1e-29 135.2 465 32.5
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-29 135.2 454 31.3
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-29 134.8 464 32.3
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-29 134.8 192 42.2
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-29 134.4 458 30.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.4e-29 134.0 306 35.6
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.0e-28 131.0 482 31.7
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.5e-28 130.2 401 34.9
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.0e-27 128.6 484 34.5
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.3e-27 128.3 401 34.7
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 5.0e-27 126.3 431 31.1
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 6.6e-27 125.9 381 27.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 6.1e-25 119.4 462 30.3
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 8.0e-25 119.0 330 33.6
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 8.0e-25 119.0 226 41.6
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-24 118.2 401 31.7
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.4e-24 118.2 421 33.5
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.8e-24 117.9 306 33.3
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.0e-24 117.1 453 33.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 8.9e-24 115.5 434 32.9
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 2.9e-22 110.5 319 35.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-21 108.2 465 31.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.8e-21 107.8 192 38.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.1e-21 106.7 321 33.6
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.6e-20 104.8 461 32.8
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 5.9e-20 102.8 243 38.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.0e-19 99.8 394 28.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.1e-17 94.4 120 58.3
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.1e-16 90.5 406 27.3
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-12 78.6 72 56.9
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.0e-11 73.2 105 41.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 8.6e-11 72.4 134 47.8
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 8.6e-11 72.4 198 29.8
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 9.5e-10 68.9 58 65.5
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.6e-09 67.0 147 37.4
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.1e-08 63.9 124 34.7
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.0e-08 63.5 172 33.7


User provided reference genes

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