Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 0.0e+00 1352.8 696 100.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 0.0e+00 1352.8 696 100.0
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 0.0e+00 1110.5 705 83.5
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.0e-280 968.4 730 74.4
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.3e-231 805.4 675 69.2
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 7.9e-140 501.9 718 47.8
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.7e-118 431.0 740 43.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 3.2e-109 400.2 753 42.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 8.0e-108 395.6 732 43.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.4e-107 394.8 716 42.9
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.5e-102 375.9 721 42.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.2e-101 373.2 724 41.0
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.8e-99 365.9 744 40.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.2e-98 365.2 726 41.0
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.6e-98 364.0 713 41.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 1.7e-94 351.3 757 40.4
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 5.2e-91 339.7 708 39.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.2e-89 334.3 747 38.2
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 6.3e-89 332.8 742 38.9
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.4e-88 329.7 706 39.1
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.5e-85 321.6 743 36.6
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.2e-84 318.5 722 37.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.0e-83 315.5 723 38.6
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.6e-82 310.8 798 36.2
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.4e-80 304.3 709 38.4
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 3.2e-80 303.9 720 35.7
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.5e-79 300.1 721 36.1
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.3e-78 298.5 685 39.1
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 7.3e-77 292.7 759 34.5
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.6e-76 290.4 717 36.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.0e-75 287.0 706 36.4
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.2e-75 286.6 708 37.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 8.9e-75 285.8 763 35.9
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.5e-71 273.9 678 36.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 5.0e-70 270.0 718 37.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.6e-70 269.6 708 35.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 9.5e-69 265.8 685 36.4
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 3.1e-67 260.8 716 35.2
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 3.1e-67 260.8 717 36.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.5e-66 258.5 708 34.7
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.4e-66 257.3 682 35.2
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.1e-64 252.3 705 36.6
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.9e-64 251.5 713 33.7
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.0e-62 245.7 747 33.2
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.1e-61 242.3 707 33.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.9e-61 241.5 687 34.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 3.3e-61 240.7 711 35.0
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 7.3e-61 239.6 707 33.0
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 9.5e-61 239.2 727 33.1
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.8e-60 237.7 708 34.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-59 234.6 203 66.0
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.0e-59 233.8 719 34.9
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.8e-59 233.0 715 34.8
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-58 231.9 714 35.2
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 5.8e-58 229.9 719 33.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.9e-57 227.6 623 36.3
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.9e-57 227.6 608 37.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.1e-56 225.7 702 31.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 7.1e-56 223.0 653 32.5
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.7e-55 221.1 598 35.8
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.7e-54 218.4 713 33.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 7.3e-53 213.0 777 32.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.3e-53 213.0 673 34.2
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.2e-52 212.2 175 66.3
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.2e-52 212.2 165 73.3
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.6e-52 210.7 162 69.8
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 6.2e-52 209.9 165 72.1
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.8e-51 208.4 688 32.6
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 6.8e-51 206.5 344 44.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.8e-51 206.5 715 32.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.2e-50 205.7 709 33.0
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.5e-50 205.3 169 68.0
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.6e-50 204.5 667 32.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.8e-50 203.4 174 67.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 9.9e-50 202.6 724 31.4
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 2.2e-49 201.4 211 55.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 8.4e-49 199.5 681 30.8
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.1e-48 199.1 724 32.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-48 198.7 677 30.9
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.4e-48 196.8 712 32.0
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-45 188.7 712 32.2
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.5e-45 188.0 670 30.7
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 5.6e-45 186.8 701 29.7
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 9.6e-45 186.0 685 30.7
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.6e-45 186.0 703 31.3
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.3e-44 185.7 169 62.7
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.6e-44 185.3 677 31.0
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 3.6e-44 184.1 137 73.7
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 6.2e-44 183.3 672 29.2
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.4e-43 182.2 734 30.1
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 9.0e-43 179.5 702 30.6
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.5e-42 178.7 379 36.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.6e-42 177.9 678 29.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.6e-42 177.9 710 29.0
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.4e-42 177.2 168 61.3
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.2e-41 174.9 653 30.2
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 2.2e-41 174.9 716 31.1
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.2e-41 174.9 169 60.9
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.8e-41 174.1 702 30.3
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.1e-39 168.3 669 32.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-39 168.3 709 29.5
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 6.0e-39 166.8 170 60.0
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 7.9e-39 166.4 674 30.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.3e-38 164.9 705 30.1
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 8.7e-38 162.9 117 74.4
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.5e-37 162.2 698 28.9
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.5e-37 162.2 709 28.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.9e-37 161.8 681 30.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.1e-36 158.3 163 58.3
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.8e-36 157.9 262 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.4e-35 154.8 234 45.7
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 9.0e-35 152.9 153 59.5
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.8e-34 150.2 673 27.6
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.7e-33 148.7 275 42.5
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.7e-33 148.7 721 28.3
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.2e-33 148.3 687 28.4
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 4.9e-33 147.1 692 29.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 6.4e-33 146.7 138 60.1
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.3e-32 142.9 162 54.3
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.5e-31 141.0 158 53.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.6e-31 140.6 163 52.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 5.1e-30 137.1 217 45.6
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.3e-29 134.4 164 50.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.8e-28 131.3 166 51.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.7e-28 131.0 861 26.7
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.8e-27 128.6 210 46.7
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.0e-27 127.5 165 50.9
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 3.8e-25 120.9 692 27.6
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 4.9e-25 120.6 102 62.7
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.4e-24 119.0 566 29.2
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 7.1e-24 116.7 161 46.6
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-23 114.4 142 52.1
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 7.9e-23 113.2 73 76.7
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-22 112.1 142 47.9
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.3e-22 111.7 89 67.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 5.7e-21 107.1 636 26.7
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.6e-20 105.5 588 27.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.8e-20 104.0 87 63.2
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 8.2e-20 103.2 133 46.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 3.1e-19 101.3 87 60.9
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 9.3e-16 89.7 98 59.2
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.6e-15 89.0 587 24.9
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 8.7e-14 83.2 158 39.2
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.2e-12 78.6 295 31.2
Sabra10G0107100 Salix brachista HOM05D001752 ORTHO05D003933 4.2e-08 64.3 59 55.9
SMO361G0045 Selaginella moellendorffii HOM05D005042 ORTHO05D006080 5.5e-08 63.9 78 47.4


User provided reference genes

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