Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.7e-135 486.1 268 100.0
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.7e-135 486.1 268 100.0
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.1e-116 422.2 268 81.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.0e-111 407.1 267 79.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.2e-106 389.4 268 74.6
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.4e-97 358.2 243 73.7
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 5.1e-95 351.7 243 72.0
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.7e-90 336.7 242 69.4
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 4.2e-89 332.0 243 68.7
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 7.1e-89 331.3 243 68.3
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.6e-88 330.1 244 70.1
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 6.0e-88 328.2 245 66.9
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 3.0e-87 325.9 242 67.8
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 8.7e-87 324.3 243 67.1
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.3e-86 322.4 238 68.5
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 8.1e-85 317.8 240 68.3
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.4e-84 316.2 242 66.9
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 2.4e-84 316.2 242 66.9
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 9.0e-84 314.3 238 66.0
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 4.5e-83 312.0 243 64.2
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.7e-82 310.1 243 64.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.7e-82 310.1 237 66.7
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 2.2e-82 309.7 247 64.8
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 2.9e-82 309.3 241 64.3
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.8e-82 308.9 243 63.8
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.8e-82 308.9 243 63.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 4.9e-82 308.5 238 66.0
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 8.4e-82 307.8 238 64.7
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 8.4e-82 307.8 237 66.2
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.4e-81 307.0 238 66.0
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.9e-81 306.6 246 63.4
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 5.4e-81 305.1 246 62.6
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.1e-81 304.7 246 63.0
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 7.1e-81 304.7 239 65.3
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 7.1e-81 304.7 245 64.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.6e-80 303.5 244 64.3
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.5e-80 302.4 242 64.5
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.5e-80 302.4 242 64.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 4.6e-80 302.0 243 60.9
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.0e-79 300.8 238 65.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.0e-79 300.8 243 63.0
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.0e-79 300.8 244 63.9
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.0e-79 300.8 237 62.9
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.3e-79 300.4 242 62.0
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.8e-79 300.1 237 65.4
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 5.1e-79 298.5 243 63.8
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 5.1e-79 298.5 240 62.9
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 5.1e-79 298.5 237 64.1
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 6.7e-79 298.1 241 61.8
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 6.7e-79 298.1 240 62.9
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.1e-78 297.4 241 60.6
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.9e-78 296.6 241 60.2
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.3e-78 295.8 241 61.8
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 3.3e-78 295.8 240 62.1
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 7.4e-78 294.7 238 61.3
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 7.4e-78 294.7 240 62.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 9.6e-78 294.3 242 61.2
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.3e-77 293.9 237 62.0
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.6e-77 293.5 240 62.1
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.6e-77 293.5 240 62.1
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.7e-77 292.4 240 62.1
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.7e-77 292.4 240 62.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.7e-77 292.4 241 61.8
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 6.2e-77 291.6 240 62.5
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 8.1e-77 291.2 240 61.2
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 8.1e-77 291.2 244 60.7
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.1e-76 290.8 240 62.5
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.1e-76 290.8 237 60.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.4e-76 290.4 248 60.9
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.8e-76 290.0 238 61.3
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.4e-76 289.7 237 63.7
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.2e-75 287.3 243 60.1
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.5e-75 287.0 240 57.5
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.4e-75 285.8 238 63.9
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 4.5e-75 285.4 240 62.1
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 9.9e-75 284.3 237 61.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 8.4e-74 281.2 245 60.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 8.4e-74 281.2 240 61.2
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.4e-73 280.4 239 59.8
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.9e-73 280.0 240 61.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.5e-73 279.6 246 59.3
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-72 277.3 237 61.2
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 2.7e-72 276.2 238 60.5
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 6.0e-72 275.0 232 59.9
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.3e-71 273.9 226 61.9
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 8.7e-71 271.2 238 58.4
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 8.7e-71 271.2 242 56.6
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 2.5e-70 269.6 238 58.8
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 3.3e-70 269.2 238 58.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 6.2e-69 265.0 242 55.4
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.1e-68 264.2 224 59.8
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.4e-68 263.8 240 55.8
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.4e-68 263.8 229 56.8
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.1e-68 262.7 238 57.6
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.0e-68 262.3 210 63.3
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.2e-67 260.8 239 56.9
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.5e-67 258.8 237 56.5
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.8e-67 258.5 237 59.9
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.0e-66 257.7 238 56.7
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.5e-66 255.0 238 55.9
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.9e-65 253.4 237 59.9
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 3.2e-65 252.7 238 56.3
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.6e-64 250.4 238 57.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.1e-64 250.0 238 55.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.0e-63 247.7 242 55.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.3e-63 247.3 252 51.6
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 6.3e-61 238.4 239 54.8
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 5.3e-60 235.3 248 52.0
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.7e-59 231.5 216 57.9
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 3.8e-58 229.2 216 57.4
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 5.0e-58 228.8 178 62.4
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 6.5e-58 228.4 238 50.8
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 8.5e-58 228.0 234 50.9
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.8e-55 220.3 240 49.6
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.7e-54 215.3 195 58.5
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 5.3e-52 208.8 239 50.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 9.1e-52 208.0 225 51.1
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.6e-51 206.5 148 62.8
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.0e-50 204.5 240 48.8
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-48 196.4 235 46.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.9e-42 176.4 229 42.8
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.9e-33 147.1 177 45.8
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 4.2e-33 146.0 109 58.7
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 7.2e-33 145.2 238 39.1
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-30 137.5 231 34.2
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.4e-30 136.3 133 54.1
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-29 133.7 144 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.8e-28 130.6 228 34.6
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.8e-28 130.6 247 37.7
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-28 130.2 250 37.2
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.1e-28 129.4 230 32.6
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 5.3e-28 129.0 236 35.6
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.3e-26 124.4 234 31.6
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 5.0e-26 122.5 220 35.0
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.2e-25 119.8 150 43.3
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.5e-22 108.6 157 41.4
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 3.6e-16 89.7 86 53.5
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 5.2e-15 85.9 71 63.4
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 5.2e-15 85.9 71 63.4
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-11 73.9 75 56.0
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-11 73.6 187 30.5


User provided reference genes

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