Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.8e-101 370.5 197 100.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 8.6e-92 340.5 198 92.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.7e-90 334.7 197 92.4
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.5e-83 312.4 197 85.8
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 5.6e-83 311.2 241 75.1
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 5.6e-83 311.2 197 84.8
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.6e-82 309.7 191 85.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 8.1e-82 307.4 198 83.8
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.1e-81 305.4 197 84.8
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-81 305.4 197 83.8
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.0e-81 305.1 197 83.8
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.5e-80 303.1 189 85.2
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.4e-80 301.6 197 83.2
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 9.9e-80 300.4 197 83.2
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 9.9e-80 300.4 195 83.1
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 9.9e-80 300.4 195 81.5
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 9.9e-80 300.4 197 83.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 9.9e-80 300.4 197 83.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 3.7e-79 298.5 195 82.1
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.1e-78 297.0 193 81.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-78 297.0 190 80.5
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.9e-78 296.2 189 85.2
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.9e-78 296.2 197 82.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.4e-78 295.8 197 79.7
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.2e-78 295.4 174 87.9
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.2e-78 295.4 181 84.5
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.2e-78 295.4 195 80.5
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 4.1e-78 295.0 185 82.7
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 4.1e-78 295.0 197 80.2
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 5.4e-78 294.7 189 83.6
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 7.1e-78 294.3 192 82.3
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.2e-78 293.9 196 80.1
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 9.2e-78 293.9 195 83.1
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 9.2e-78 293.9 197 81.7
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 9.2e-78 293.9 197 78.7
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.2e-78 293.9 185 83.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-77 293.5 188 83.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.2e-77 293.5 195 80.5
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.2e-77 293.5 191 82.7
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-77 292.7 197 79.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.7e-77 292.4 196 79.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-77 292.4 197 80.7
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 3.5e-77 292.0 197 78.2
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.5e-77 292.0 197 81.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.5e-77 292.0 195 80.0
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.5e-77 292.0 197 78.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.6e-77 291.6 197 80.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.8e-77 290.8 193 80.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.8e-77 290.8 194 79.9
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.8e-77 290.8 184 82.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.0e-76 290.4 175 85.7
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.3e-76 290.0 188 82.4
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.3e-76 290.0 188 82.4
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.3e-76 290.0 197 79.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.3e-76 289.3 181 84.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 3.0e-76 288.9 193 80.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 3.0e-76 288.9 195 80.0
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.0e-76 288.9 196 77.6
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 6.6e-76 287.7 187 80.7
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 8.6e-76 287.3 176 84.1
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.5e-75 286.6 197 77.7
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 193 77.7
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.3e-75 285.0 168 85.7
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 7.3e-75 284.3 178 83.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-75 284.3 181 81.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 9.6e-75 283.9 195 77.9
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-74 283.5 191 77.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.6e-74 283.1 174 83.3
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.6e-74 283.1 179 78.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.1e-74 282.7 188 78.7
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 191 77.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.1e-74 282.7 206 72.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.6e-74 282.0 188 78.2
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.6e-74 282.0 173 81.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.6e-74 282.0 181 80.7
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.6e-74 282.0 199 76.4
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.1e-74 280.8 188 77.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 8.1e-74 280.8 197 76.1
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 199 77.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.8e-73 279.6 202 75.7
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.4e-73 279.3 188 77.1
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.4e-73 279.3 181 77.3
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.2e-73 278.1 199 77.9
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 6.8e-73 277.7 184 79.3
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.8e-73 277.7 185 78.9
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.2e-72 276.9 185 77.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.2e-72 276.9 197 76.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 182 78.6
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.6e-72 275.8 189 75.7
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.6e-72 275.8 188 76.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.6e-72 275.8 188 76.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 3.4e-72 275.4 186 78.0
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 4.4e-72 275.0 189 75.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 4.4e-72 275.0 189 75.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 7.6e-72 274.2 188 76.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 7.6e-72 274.2 189 75.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 9.9e-72 273.9 187 77.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-71 273.1 230 67.8
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.2e-71 272.7 197 76.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.9e-71 271.6 197 74.1
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.2e-70 268.9 188 75.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.2e-70 268.9 188 75.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.2e-70 268.9 188 75.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.2e-70 268.9 188 75.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 4.2e-70 268.5 239 65.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 7.1e-70 267.7 154 89.6
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.1e-69 266.2 190 76.3
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.3e-68 263.5 197 73.6
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.3e-68 263.5 193 73.6
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.3e-68 262.7 232 65.9
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.3e-67 257.7 159 84.9
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.2e-64 250.4 162 79.0
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.3e-63 246.9 249 57.0
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 4.9e-63 245.0 197 70.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 4.2e-62 241.9 185 67.0
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 7.1e-62 241.1 183 65.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-61 239.6 197 70.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 7.3e-59 231.1 140 85.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 9.6e-59 230.7 185 62.2
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.6e-58 228.8 133 88.7
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.1e-57 227.3 143 81.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.8e-57 226.5 182 64.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.6e-56 221.1 137 86.9
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.2e-55 219.5 137 84.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 3.8e-55 218.8 176 60.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 6.7e-52 208.0 135 80.0
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.6e-51 204.9 127 82.7
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.3e-50 203.8 125 81.6
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 8.1e-50 201.1 145 73.8
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.6e-48 196.1 214 59.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.9e-47 192.6 124 78.2
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 5.5e-46 188.3 110 87.3
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-45 187.2 128 78.1
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.1e-41 172.6 115 79.1
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.9e-41 171.4 109 81.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.9e-39 166.0 102 80.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.1e-37 159.8 107 81.3
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 6.7e-36 154.8 170 48.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.3e-34 148.3 93 79.6
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.8e-33 146.7 98 82.7
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.1e-33 146.0 167 44.3
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.1e-33 146.0 104 77.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 9.0e-33 144.4 102 74.5
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.0e-32 143.3 95 84.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.4e-30 134.4 81 84.0
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 3.0e-28 129.4 172 41.3
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 5.1e-28 128.6 104 69.2
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 6.7e-28 128.3 189 34.4
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.5e-27 127.1 75 85.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.8e-26 122.1 101 68.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.1e-25 120.9 95 63.2
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-25 119.8 100 69.0
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.3e-17 92.0 57 80.7
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-14 82.4 59 72.9
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.1e-13 80.1 46 82.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-13 79.7 111 47.7
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.0e-13 78.2 111 46.8
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.0e-13 78.2 111 46.8
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.0e-12 76.3 111 45.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.9e-12 75.9 111 45.9
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.4e-09 66.6 114 43.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.4e-09 66.6 70 58.6
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-07 60.8 36 80.6
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 1.5e-06 57.4 53 62.3


User provided reference genes

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