Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 2.0e-197 692.2 338 100.0
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 8.0e-122 441.0 221 95.0
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 7.3e-107 391.3 219 81.7
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 2.9e-103 379.4 219 77.2
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 1.1e-102 377.5 218 80.3
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 5.4e-102 375.2 235 74.0
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.2e-101 374.0 219 79.5
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 1.0e-100 370.9 219 78.1
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 1.3e-100 370.5 220 78.2
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.7e-100 370.2 219 77.6
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 2.3e-100 369.8 220 77.3
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 2.5e-99 366.3 219 78.1
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 4.3e-99 365.5 219 79.0
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 5.6e-99 365.2 219 76.7
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 5.6e-99 365.2 219 75.8
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 1.6e-98 363.6 219 75.8
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 2.1e-98 363.2 219 75.3
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 2.8e-98 362.8 219 76.7
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 2.8e-98 362.8 220 77.7
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 3.6e-98 362.5 220 76.8
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 3.6e-98 362.5 219 75.8
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 4.7e-98 362.1 219 74.9
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 4.7e-98 362.1 219 75.3
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 4.7e-98 362.1 219 77.6
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 8.1e-98 361.3 219 79.5
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 1.1e-97 360.9 220 77.3
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 2.3e-97 359.8 219 77.2
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 2.3e-97 359.8 220 76.8
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 3.1e-97 359.4 219 77.2
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 5.2e-97 358.6 219 75.3
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 8.9e-97 357.8 219 78.5
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 1.5e-96 357.1 219 75.3
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 1.5e-96 357.1 219 77.2
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 2.6e-96 356.3 219 72.6
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 2.6e-96 356.3 222 73.9
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 3.4e-96 355.9 219 74.9
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 3.4e-96 355.9 220 75.5
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 5.8e-96 355.1 220 74.5
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 5.8e-96 355.1 219 75.3
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 7.6e-96 354.8 214 78.0
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 9.9e-96 354.4 281 63.3
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 2.2e-95 353.2 221 73.3
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 2.2e-95 353.2 221 73.3
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 2.2e-95 353.2 219 74.9
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 2.2e-95 353.2 219 75.8
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 3.8e-95 352.4 219 75.3
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 4.9e-95 352.1 219 74.0
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 8.4e-95 351.3 219 74.9
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 7.1e-94 348.2 219 73.1
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 1.6e-93 347.1 219 74.0
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 2.1e-93 346.7 219 72.1
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 2.1e-93 346.7 221 74.2
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 2.1e-93 346.7 219 72.1
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 2.7e-93 346.3 219 71.7
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 2.7e-93 346.3 219 74.4
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 2.7e-93 346.3 220 75.0
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 2.7e-93 346.3 222 73.0
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 3.5e-93 345.9 219 74.4
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 7.8e-93 344.7 219 72.6
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 1.7e-92 343.6 219 74.0
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 2.3e-92 343.2 219 75.8
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 3.0e-92 342.8 219 71.7
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 3.9e-92 342.4 222 72.5
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 5.1e-92 342.0 219 71.7
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 6.6e-92 341.7 219 73.1
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 8.6e-92 341.3 219 70.8
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.1e-91 340.9 224 74.1
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 5.6e-91 338.6 228 71.1
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 5.6e-91 338.6 219 70.3
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 5.6e-91 338.6 220 72.3
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 5.6e-91 338.6 217 74.7
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 1.2e-90 337.4 220 73.2
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 2.1e-90 336.7 245 66.1
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 2.8e-90 336.3 212 73.6
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 4.7e-90 335.5 233 67.0
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 3.1e-89 332.8 219 71.7
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 1.2e-88 330.9 221 72.9
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 2.6e-88 329.7 211 74.9
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 3.4e-88 329.3 221 71.5
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 5.8e-88 328.6 221 72.4
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 2.2e-87 326.6 221 71.9
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 2.9e-87 326.2 221 71.5
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 3.8e-87 325.9 221 71.0
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 4.9e-87 325.5 221 71.5
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 1.9e-86 323.6 221 71.9
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 2.4e-86 323.2 221 70.6
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 2.4e-86 323.2 222 72.1
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 4.2e-86 322.4 221 71.0
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 1.6e-85 320.5 229 65.5
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 6.0e-85 318.5 221 69.7
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 1.3e-84 317.4 220 65.9
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.7e-84 317.0 219 68.0
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 2.3e-84 316.6 236 67.4
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 3.9e-84 315.8 220 65.5
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 6.6e-84 315.1 236 66.5
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 8.7e-84 314.7 221 69.2
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.3e-82 310.8 300 52.3
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 2.8e-82 309.7 215 64.7
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 4.5e-80 302.4 219 68.0
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 9.9e-80 301.2 218 65.1
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 1.2e-77 294.3 218 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.7e-74 282.7 219 60.7
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 5.3e-73 278.9 168 76.2
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 1.7e-71 273.9 216 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 9.3e-70 268.1 215 56.3
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 4.6e-69 265.8 220 55.0
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 3.0e-68 263.1 219 54.8
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 5.1e-68 262.3 213 55.4
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 9.6e-67 258.1 214 53.7
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 9.6e-67 258.1 220 53.2
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 1.4e-57 227.6 219 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 9.0e-57 224.9 218 46.8
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 8.7e-52 208.4 217 47.0
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 2.8e-50 203.4 131 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 2.1e-45 187.2 209 41.6
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 8.8e-44 181.8 108 76.9
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 1.1e-43 181.4 214 44.4
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 6.9e-41 172.2 118 66.9
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 1.2e-37 161.4 108 70.4
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.1e-33 148.3 89 75.3
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 2.4e-33 147.1 181 44.8
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 1.0e-31 141.7 87 70.1
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.1e-30 138.3 98 63.3
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 7.2e-30 135.6 125 58.4
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.7e-26 124.4 81 71.6
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 5.3e-25 119.4 76 73.7
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 6.5e-23 112.5 76 69.7
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 3.0e-20 103.6 62 77.4
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 2.8e-18 97.1 195 31.8
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 6.3e-18 95.9 181 32.0
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 1.8e-17 94.4 206 30.1
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 5.4e-17 92.8 197 29.4
TWI53G2011 Tripterygium wilfordii HOM05D003127 ORTHO05D003709 2.7e-16 90.5 210 30.0
PRCOL_00005818 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 5.0e-15 86.3 199 24.6
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.4e-12 78.2 184 26.1
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 2.8e-10 70.5 176 23.3
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 2.0e-08 64.3 73 46.6
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 2.0e-08 64.3 39 74.4
Lalb_Chr13g0293501 Lupinus albus HOM05D005985 ORTHO05D007403 7.8e-08 62.4 45 60.0
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.3e-07 61.6 119 29.4


User provided reference genes

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