Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 0.0e+00 2613.6 1295 100.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 0.0e+00 2157.9 1342 82.6
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 0.0e+00 1234.9 1281 53.5
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 0.0e+00 1166.4 1318 50.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 0.0e+00 1165.6 1301 50.3
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 0.0e+00 1159.1 1305 50.3
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 8.8e-310 1067.4 1316 47.3
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.7e-303 1045.8 1314 47.5
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 1.1e-293 1013.8 1315 47.7
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.3e-292 1010.4 1295 46.0
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.4e-291 1006.9 1307 45.0
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 5.7e-285 984.9 1319 45.3
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.8e-270 936.8 1447 41.1
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.5e-266 922.2 1254 44.4
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 6.1e-263 911.8 1340 43.3
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.4e-262 910.6 1300 42.7
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.0e-253 880.2 1356 40.9
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.2e-252 876.7 1323 41.4
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.4e-251 874.0 1283 41.7
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 7.8e-250 868.2 1317 41.5
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 8.6e-249 864.8 1406 39.7
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.0e-245 853.6 1353 40.5
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 9.2e-243 844.7 1278 42.0
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 3.2e-227 793.1 1465 36.7
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 9.9e-221 771.5 1260 39.0
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-208 731.1 1323 35.4
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 4.8e-207 726.1 1290 37.7
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 2.0e-205 720.7 1315 36.5
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 2.6e-205 720.3 1294 38.5
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 4.6e-202 709.5 1389 35.3
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 7.9e-202 708.8 1299 36.0
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.9e-200 704.1 1362 36.0
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 2.2e-199 700.7 1299 35.8
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 8.5e-196 688.7 1351 34.1
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.1e-195 688.3 1598 33.2
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.6e-194 683.3 923 44.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 4.6e-194 682.9 1320 36.2
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 7.9e-194 682.2 1299 36.3
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.0e-193 681.8 1367 34.8
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 4.3e-192 676.4 1315 36.0
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 5.7e-192 676.0 1300 36.2
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 7.4e-192 675.6 1316 36.1
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.7e-191 674.5 1225 37.1
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 6.9e-190 669.1 1305 34.8
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.2e-189 668.3 1342 35.2
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.0e-189 667.5 1371 35.3
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 6.5e-188 662.5 1350 35.0
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 6.5e-188 662.5 1350 35.0
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 1.9e-187 661.0 1339 34.7
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 7.9e-186 655.6 1342 34.6
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 1.0e-185 655.2 1354 34.7
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 3.0e-185 653.7 1287 35.3
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.1e-184 651.7 955 42.6
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 2.8e-183 647.1 1309 34.8
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.4e-182 644.0 1362 35.2
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 5.9e-181 639.4 1306 33.9
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 3.8e-180 636.7 1295 35.3
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 5.0e-180 636.3 1324 34.7
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 5.0e-180 636.3 1400 34.4
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 6.5e-180 636.0 1297 34.6
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.4e-179 634.8 1346 34.1
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.4e-179 634.8 1376 33.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 6.7e-177 625.9 1314 34.3
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.1e-174 618.6 1278 34.0
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 5.9e-173 612.8 1433 32.4
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 2.2e-172 610.9 1292 33.4
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 1.1e-171 608.6 1341 32.7
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.5e-171 608.2 1311 32.2
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 2.5e-171 607.4 1358 33.5
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.3e-167 595.1 1261 34.0
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.7e-167 594.7 1297 33.8
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 8.3e-167 592.4 1323 33.7
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.1e-166 590.5 1496 30.8
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 3.4e-160 570.5 1544 30.7
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.2e-157 562.0 1620 29.1
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.9e-155 554.7 1297 31.6
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 4.0e-153 547.0 1122 34.8
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 5.2e-153 546.6 1307 31.1
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 4.9e-151 540.0 857 40.1
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 3.6e-146 523.9 1557 29.2
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 2.2e-143 514.6 1327 30.7
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.6e-140 503.1 1325 30.7
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.8e-138 497.7 1258 32.5
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 6.8e-137 493.0 1453 29.3
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 4.1e-134 483.8 624 44.7
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.9e-129 466.1 956 36.3
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-128 464.9 957 35.7
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 2.7e-125 454.5 1409 27.7
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.5e-123 448.0 1483 28.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 3.6e-122 444.1 1090 32.2
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 7.8e-117 426.4 1303 27.7
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 5.3e-113 413.7 1312 27.1
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 2.4e-110 404.8 1303 28.8
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 9.3e-110 402.9 688 39.5
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.5e-107 394.8 1299 27.6
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.1e-105 389.4 1300 27.2
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 8.4e-103 379.8 1349 26.8
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 5.3e-97 360.5 265 65.3
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 6.9e-97 360.1 669 37.4
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 7.1e-94 350.1 285 56.8
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.4e-89 335.9 799 31.8
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 8.7e-84 316.6 478 40.0
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.1e-81 308.1 368 47.3
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 7.7e-80 303.5 480 40.6
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.1e-73 281.2 299 53.8
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 9.1e-73 280.0 1303 25.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.5e-64 251.1 209 58.4
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 8.5e-63 246.9 210 58.6
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.8e-60 239.2 416 32.9
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 5.2e-60 237.7 215 54.0
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.2e-45 189.9 149 59.7
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 8.8e-44 183.7 126 69.0
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.1e-41 176.8 122 66.4
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 3.6e-37 161.8 110 66.4
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.4e-33 149.1 173 48.0
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.0e-32 146.0 207 38.6
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.0e-31 143.7 90 71.1
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 8.0e-29 134.0 475 27.6
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.3e-28 132.5 129 50.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.9e-26 125.6 76 71.1
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.3e-26 124.0 250 36.4
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.4e-25 123.2 69 78.3
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.0e-23 117.1 71 73.2
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 6.6e-23 114.4 68 73.5
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.4e-19 101.7 86 57.0
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.9e-18 99.0 81 60.5
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 6.4e-18 97.8 128 40.6
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.9e-17 96.3 221 34.8
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 9.2e-17 94.0 124 40.3
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.5e-14 85.9 67 59.7
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 6.2e-13 81.3 321 27.1
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 1.8e-12 79.7 110 40.0
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 5.2e-12 78.2 105 39.0
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 6.4e-10 71.2 120 32.5
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.7e-07 63.2 195 29.2
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 1.7e-07 63.2 60 50.0
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 2.5e-06 59.3 154 30.5


User provided reference genes

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