Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.5e-132 474.6 230 100.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.1e-125 451.8 230 94.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 9.0e-125 450.3 227 95.6
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.0e-120 436.8 226 90.7
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 3.9e-120 434.9 226 89.8
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.1e-120 434.5 226 89.8
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-119 433.3 226 89.4
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.3e-119 431.4 226 89.4
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 7.4e-119 430.6 226 88.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.6e-118 429.5 226 88.5
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 6.9e-117 424.1 226 87.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.5e-116 422.9 228 87.3
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.5e-116 421.4 227 87.7
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.3e-115 419.9 224 87.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 6.5e-115 417.5 224 87.1
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 8.4e-115 417.2 227 85.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.4e-114 416.4 227 85.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.2e-114 415.2 227 85.9
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 4.2e-114 414.8 224 86.2
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 5.5e-114 414.5 224 86.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 7.1e-114 414.1 223 87.9
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.1e-114 414.1 225 86.7
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 9.3e-114 413.7 224 85.7
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.6e-113 412.9 227 85.0
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.1e-113 412.5 224 86.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.1e-113 412.5 224 86.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.7e-113 412.1 224 84.8
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 3.5e-113 411.8 224 87.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.6e-113 411.4 227 85.5
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 6.0e-113 411.0 224 86.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 6.0e-113 411.0 221 86.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 6.0e-113 411.0 226 86.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 7.9e-113 410.6 224 85.7
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 86.2
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.3e-112 409.8 225 84.9
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 3.0e-112 408.7 228 82.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 227 84.6
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.0e-112 408.7 221 85.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.0e-112 408.7 224 83.9
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 227 85.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 3.0e-112 408.7 227 85.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 86.9
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 87.8
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.1e-112 407.9 221 87.3
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 86.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.1e-112 407.9 226 83.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 6.7e-112 407.5 226 84.1
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.7e-112 407.5 232 83.6
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 8.7e-112 407.1 222 86.0
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 8.7e-112 407.1 222 86.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 86.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 83.9
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.5e-111 406.4 227 82.8
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 84.4
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.5e-111 405.6 224 84.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.3e-111 404.8 222 83.3
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 84.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 7.4e-111 404.1 222 86.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 7.4e-111 404.1 224 83.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 9.7e-111 403.7 228 82.9
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 9.7e-111 403.7 224 85.3
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.3e-110 403.3 222 83.3
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.3e-110 403.3 224 83.5
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-110 402.9 227 83.7
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 4.8e-110 401.4 219 84.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 4.8e-110 401.4 221 85.1
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.8e-110 401.4 227 83.7
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 8.2e-110 400.6 221 83.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 8.2e-110 400.6 221 83.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 8.2e-110 400.6 221 83.3
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.4e-109 399.8 224 84.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-109 399.4 220 85.0
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.8e-109 399.4 219 84.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.4e-109 399.1 223 82.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.4e-109 399.1 219 84.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 84.8
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.4e-109 399.1 224 83.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.3e-109 397.9 224 82.1
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 5.3e-109 397.9 222 82.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 6.9e-109 397.5 224 82.6
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 6.9e-109 397.5 223 83.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 9.0e-109 397.1 224 82.1
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 9.0e-109 397.1 219 83.1
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.2e-108 396.7 219 82.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.2e-108 396.7 238 80.3
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.5e-108 396.4 225 81.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.5e-108 396.4 221 83.3
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.0e-108 396.0 210 88.1
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-108 396.0 249 77.1
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 3.4e-108 395.2 219 83.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.4e-108 395.2 222 82.0
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 4.5e-108 394.8 221 85.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.0e-107 393.7 224 81.2
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.0e-107 393.7 210 87.6
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.0e-107 393.7 224 83.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.3e-107 393.3 221 82.4
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 81.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.2e-107 392.5 219 83.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.9e-107 392.1 222 83.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 81.4
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.8e-107 391.7 221 83.3
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.0e-107 391.3 224 81.2
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.4e-106 389.8 219 82.2
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.4e-106 389.8 219 82.2
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.4e-106 389.8 251 74.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.9e-106 389.4 224 81.2
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 80.4
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-106 389.0 219 81.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-105 386.3 224 82.6
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.7e-105 385.6 221 79.6
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-103 379.8 279 67.4
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 7.4e-103 377.5 225 77.8
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.2e-102 375.9 225 77.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.4e-101 373.2 225 76.9
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.8e-101 372.9 216 79.2
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 5.9e-100 367.9 226 74.8
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 6.5e-99 364.4 204 83.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.9e-96 355.1 223 70.4
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.5e-92 341.7 228 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.2e-90 335.1 223 67.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.6e-87 325.9 223 66.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.6e-87 325.9 220 66.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.0e-84 316.2 219 65.8
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-82 310.5 164 89.6
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.4e-80 303.5 171 84.2
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 5.9e-76 288.1 169 77.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.6e-73 280.0 153 83.7
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.0e-71 273.1 160 76.9
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 4.1e-69 265.4 215 56.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.8e-65 252.7 131 86.3
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.4e-63 245.7 163 72.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.3e-58 228.8 217 51.2
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 7.3e-58 228.0 209 53.6
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.6e-57 226.9 129 80.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 4.4e-55 218.8 214 47.7
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 4.1e-53 212.2 148 74.3
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 5.4e-53 211.8 111 90.1
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 5.6e-50 201.8 113 79.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.3e-50 201.4 115 79.1
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.0e-43 181.0 130 60.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.2e-38 163.3 102 76.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.2e-37 159.5 86 82.6
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.8e-36 154.8 220 38.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-30 137.5 97 72.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 4.9e-30 135.6 134 51.5
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.1e-29 131.7 75 85.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.0e-27 126.3 66 87.9
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 9.6e-26 121.3 108 56.5
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 9.6e-26 121.3 78 79.5
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-25 120.6 61 90.2
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 4.9e-22 109.0 61 86.9
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.9e-21 107.1 61 85.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.8e-20 101.7 65 67.7
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-19 101.3 54 83.3
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.3e-19 100.1 64 76.6
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.0e-19 99.8 65 75.4
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-18 97.8 64 75.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.6e-17 92.8 128 46.1
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.3e-14 84.3 54 79.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 3.8e-14 82.8 100 46.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.3e-11 73.6 50 68.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-10 70.1 39 79.5
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.0e-07 60.5 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.3e-06 57.8 35 77.1


User provided reference genes

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