Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 5.4e-276 953.7 498 100.0
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 5.7e-225 784.3 540 81.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.5e-79 301.2 492 44.9
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 7.5e-76 288.9 553 41.0
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.2e-69 266.2 519 41.4
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.2e-68 265.0 575 39.0
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.4e-68 263.5 577 39.5
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 9.8e-60 235.3 581 35.6
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 5.1e-56 223.0 548 39.1
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.6e-54 218.0 582 35.6
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 4.0e-53 213.4 397 42.6
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.7e-48 198.0 343 42.9
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.9e-48 196.8 576 35.1
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.9e-47 194.5 569 34.8
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.5e-47 194.1 534 36.9
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 5.2e-45 186.4 365 41.1
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 6.9e-45 186.0 566 36.9
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 6.9e-45 186.0 524 34.7
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.6e-44 184.1 559 33.1
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.4e-44 183.7 648 32.1
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.4e-42 177.6 528 34.8
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 2.4e-42 177.6 366 41.5
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.2e-42 176.8 534 34.1
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 4.2e-42 176.8 652 32.1
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 3.5e-41 173.7 572 33.7
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.6e-41 173.3 535 34.8
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.3e-40 171.8 535 35.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 8.7e-40 169.1 513 33.3
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 4.3e-39 166.8 390 36.9
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 9.6e-39 165.6 544 34.4
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 1.3e-38 165.2 548 32.7
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.6e-38 164.9 544 34.4
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 2.1e-38 164.5 560 34.1
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.1e-38 164.5 532 35.0
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.1e-38 164.5 546 34.2
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 3.6e-38 163.7 360 39.2
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.1e-37 162.2 359 38.7
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 1.4e-37 161.8 557 31.6
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.8e-37 161.4 547 32.0
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.4e-37 161.0 554 33.9
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 3.1e-37 160.6 401 38.2
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 4.0e-37 160.2 253 49.0
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.0e-37 160.2 554 33.6
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 5.3e-37 159.8 558 33.5
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.3e-37 159.8 548 32.3
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 6.9e-37 159.5 555 33.5
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.2e-36 158.7 422 36.5
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.4e-36 157.1 567 31.0
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 7.6e-36 156.0 565 32.4
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 7.6e-36 156.0 489 31.9
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.3e-35 155.2 530 33.4
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.3e-35 155.2 301 42.2
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 2.2e-35 154.5 572 33.7
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.8e-35 153.7 524 32.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 3.8e-35 153.7 494 32.0
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 4.9e-35 153.3 391 36.6
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 6.4e-35 152.9 493 33.3
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.9e-34 151.4 284 46.1
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.9e-34 151.4 548 33.6
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.4e-34 151.0 546 33.0
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.4e-34 149.8 539 33.6
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.6e-33 148.3 527 34.0
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 2.1e-33 147.9 560 32.3
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.1e-33 147.9 242 46.3
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.7e-33 147.5 573 31.6
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 3.5e-33 147.1 524 33.2
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 6.0e-33 146.4 529 32.1
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 6.0e-33 146.4 365 37.8
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 7.9e-33 146.0 498 32.9
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 7.9e-33 146.0 533 31.9
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 7.9e-33 146.0 359 38.4
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.0e-32 145.6 242 45.9
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.0e-32 145.6 371 36.7
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 1.0e-32 145.6 531 32.8
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.3e-32 145.2 388 35.3
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.8e-32 144.8 538 31.8
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.3e-32 144.4 400 34.8
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 8.7e-32 142.5 540 30.4
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.1e-31 142.1 365 35.6
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.5e-31 141.7 390 34.4
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.5e-31 141.7 262 43.9
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.5e-31 141.0 488 30.7
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 3.3e-31 140.6 490 30.8
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 9.6e-31 139.0 309 41.7
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 9.6e-31 139.0 537 32.8
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 9.6e-31 139.0 401 34.4
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.3e-30 138.7 394 35.3
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.1e-30 137.9 395 35.2
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.6e-30 137.1 395 34.9
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.8e-30 136.7 485 31.1
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 8.1e-30 136.0 467 31.7
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.1e-29 135.6 520 33.3
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.1e-29 135.6 558 31.9
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 1.8e-29 134.8 274 40.5
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.8e-29 134.8 542 30.3
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.4e-29 134.4 571 30.1
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 3.1e-29 134.0 553 31.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 6.9e-29 132.9 486 32.3
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 6.9e-29 132.9 272 41.2
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 9.0e-29 132.5 523 31.2
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.5e-28 131.7 273 39.2
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.5e-28 131.7 559 31.1
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.0e-28 131.3 477 29.4
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.0e-28 131.3 593 29.5
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 2.0e-28 131.3 252 43.7
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.0e-28 131.3 344 35.8
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 3.4e-28 130.6 354 35.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 5.8e-28 129.8 542 33.0
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 9.9e-28 129.0 469 33.5
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.3e-27 128.6 265 41.1
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.2e-27 127.9 526 29.7
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 6.4e-27 126.3 254 40.9
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.1e-26 125.6 260 41.2
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.4e-26 125.2 366 32.8
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.2e-26 124.0 505 31.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.2e-26 123.6 244 41.4
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 4.2e-26 123.6 409 33.3
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.2e-26 123.6 225 44.0
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.2e-26 123.6 580 28.4
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.2e-25 122.1 474 29.5
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.6e-25 121.7 257 41.6
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 7.9e-25 119.4 460 30.9
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.3e-24 118.6 284 38.7
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.8e-24 118.2 211 45.0
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.3e-24 117.9 474 29.5
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.3e-24 117.9 281 39.5
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.3e-24 117.9 224 42.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 3.0e-24 117.5 221 44.3
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 6.7e-24 116.3 295 38.0
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 6.7e-24 116.3 280 37.1
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 8.7e-24 115.9 477 28.5
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 8.7e-24 115.9 295 38.0
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 8.7e-24 115.9 263 39.5
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.1e-23 115.5 282 35.8
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.5e-23 114.4 238 39.9
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 3.3e-23 114.0 359 30.4
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 5.6e-23 113.2 366 33.3
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 7.4e-23 112.8 361 30.5
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 7.4e-23 112.8 333 31.5
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 7.4e-23 112.8 498 29.9
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 9.6e-23 112.5 289 35.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.3e-22 112.1 237 41.4
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 2.8e-22 110.9 467 30.2
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.8e-22 110.9 495 29.9
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.8e-22 110.2 282 36.9
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.8e-22 110.2 278 37.4
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 8.1e-22 109.4 258 35.7
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 8.1e-22 109.4 286 36.4
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.1e-21 109.0 240 37.1
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.1e-21 109.0 481 29.7
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.1e-21 109.0 511 29.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.1e-21 109.0 377 34.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 3.1e-21 107.5 301 32.9
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 5.3e-21 106.7 429 32.6
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 5.3e-21 106.7 471 29.1
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 6.9e-21 106.3 329 31.0
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 6.9e-21 106.3 384 31.0
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 6.9e-21 106.3 254 38.6
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.2e-20 105.5 330 30.0
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.0e-20 104.8 404 30.0
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.4e-20 104.0 364 32.7
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 3.4e-20 104.0 244 39.8
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 5.8e-20 103.2 455 30.1
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.2e-19 101.3 493 26.4
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.2e-19 101.3 499 29.7
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 3.8e-19 100.5 487 27.5
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.8e-19 100.5 225 37.3
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.1e-18 99.0 378 30.4
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 3.2e-18 97.4 224 36.2
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 5.5e-18 96.7 227 38.8
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.2e-17 95.5 293 36.5
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.1e-17 94.7 230 37.0
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 4.6e-17 93.6 219 37.0
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.3e-14 85.5 283 33.6
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 3.7e-14 84.0 278 33.5
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 3.4e-12 77.4 267 33.7
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 3.8e-11 73.9 196 35.2
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 5.0e-11 73.6 120 45.8
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.4e-10 72.0 216 34.7
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.6e-09 67.4 156 39.7
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 1.3e-08 65.5 214 30.8
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 2.3e-08 64.7 91 45.1
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 8.7e-08 62.8 45 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 9.7e-07 59.3 274 28.5
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 2.8e-06 57.8 217 30.0
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 2.8e-06 57.8 235 30.2


User provided reference genes

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