Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 5.8e-51 204.1 119 100.0
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 2.0e-27 125.9 119 65.5
Sabra08G0070300 Salix brachista HOM05D007541 ORTHO05D009404 2.6e-27 125.6 109 66.1
Potri.010G160600 Populus trichocarpa HOM05D007541 ORTHO05D009404 1.5e-22 109.8 119 57.1
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 1.1e-14 83.6 84 56.0
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 7.4e-14 80.9 67 67.2
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 1.4e-12 76.6 88 53.4
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 4.1e-12 75.1 91 47.3
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.5e-11 73.2 97 50.5
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 3.4e-11 72.0 93 52.7
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 3.4e-11 72.0 84 58.3
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 5.9e-11 71.2 86 52.3
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 1.0e-10 70.5 79 43.0
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 2.2e-10 69.3 79 43.0
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 2.9e-10 68.9 95 50.5
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 2.9e-10 68.9 91 50.5
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 3.8e-10 68.6 93 48.4
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 5.0e-10 68.2 82 52.4
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 5.0e-10 68.2 119 40.3
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 5.0e-10 68.2 95 49.5
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 6.5e-10 67.8 85 49.4
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 8.5e-10 67.4 85 49.4
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.1e-09 67.0 76 52.6
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.1e-09 67.0 91 50.5
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.1e-09 67.0 71 56.3
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 1.4e-09 66.6 77 50.6
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.9e-09 66.2 105 45.7
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 1.9e-09 66.2 72 59.7
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 2.5e-09 65.9 69 55.1
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 2.5e-09 65.9 107 41.1
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 3.2e-09 65.5 74 54.1
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 3.2e-09 65.5 74 54.1
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 3.2e-09 65.5 76 51.3
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 3.2e-09 65.5 89 46.1
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 3.2e-09 65.5 89 47.2
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 3.2e-09 65.5 68 58.8
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 4.2e-09 65.1 119 42.9
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 5.5e-09 64.7 120 40.8
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 7.2e-09 64.3 76 48.7
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 7.2e-09 64.3 76 48.7
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 7.2e-09 64.3 89 46.1
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 7.2e-09 64.3 90 47.8
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 7.2e-09 64.3 83 48.2
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 9.4e-09 63.9 66 54.5
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.2e-08 63.5 91 46.2
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 1.2e-08 63.5 90 46.7
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 1.2e-08 63.5 66 54.5
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.2e-08 63.5 119 37.8
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 1.6e-08 63.2 78 50.0
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 1.6e-08 63.2 86 50.0
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 2.1e-08 62.8 63 55.6
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 2.7e-08 62.4 85 47.1
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 2.7e-08 62.4 102 45.1
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 2.7e-08 62.4 77 48.1
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 2.7e-08 62.4 71 52.1
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 3.6e-08 62.0 91 48.4
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 4.7e-08 61.6 76 46.1
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 4.7e-08 61.6 99 44.4
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 4.7e-08 61.6 74 52.7
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 4.7e-08 61.6 74 52.7
Lsat_1_v5_gn_4_12120 Lactuca sativa HOM05D007541 ORTHO05D009404 6.1e-08 61.2 75 48.0
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 7.9e-08 60.8 105 41.0
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 7.9e-08 60.8 103 44.7
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 7.9e-08 60.8 83 48.2
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 7.9e-08 60.8 103 44.7
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 7.9e-08 60.8 103 44.7
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 7.9e-08 60.8 83 48.2
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 7.9e-08 60.8 121 47.1
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 7.9e-08 60.8 91 42.9
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 1.4e-07 60.1 92 46.7
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 1.8e-07 59.7 78 50.0
DCAR_027454 Daucus carota HOM05D007541 ORTHO05D009404 2.3e-07 59.3 71 47.9
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 3.0e-07 58.9 64 51.6
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 3.0e-07 58.9 120 39.2
Migut.L01210 Erythranthe guttata HOM05D007541 ORTHO05D009404 8.8e-07 57.4 41 80.5
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 8.8e-07 57.4 61 54.1
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 1.1e-06 57.0 61 54.1
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 1.1e-06 57.0 93 43.0
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 1.5e-06 56.6 63 52.4
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 1.5e-06 56.6 49 61.2
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.3e-06 55.5 45 62.2
Hma1.2p1_0322F.1_g124880 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 3.3e-06 55.5 48 56.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 3.3e-06 55.5 50 58.0
DCAR_007184 Daucus carota HOM05D007541 ORTHO05D009404 4.4e-06 55.1 33 75.8
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 7.4e-06 54.3 61 52.5
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 7.4e-06 54.3 31 77.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 7.4e-06 54.3 45 64.4
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 9.7e-06 53.9 80 50.0
Zm00001eb152280 Zea mays HOM05D029058 ORTHO05D009404 9.7e-06 53.9 49 53.1


User provided reference genes

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