Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.0e-70 268.5 140 100.0
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.0e-58 229.2 141 89.4
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.7e-46 189.5 141 73.0
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.9e-41 172.2 142 69.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 4.9e-41 171.4 142 69.7
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.1e-30 134.8 131 60.3
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 2.0e-26 122.9 144 53.5
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 9.3e-24 114.0 142 50.7
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.6e-23 113.2 148 51.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.7e-23 112.5 146 52.1
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 4.6e-23 111.7 143 47.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.8e-22 109.8 132 52.3
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.0e-22 109.0 139 49.6
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.5e-21 106.7 129 53.5
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 3.3e-21 105.5 131 49.6
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.3e-21 105.5 144 50.0
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 7.4e-21 104.4 130 50.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.6e-20 103.2 142 50.7
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.1e-20 102.8 79 68.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.1e-20 102.8 130 50.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-20 101.7 149 48.3
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 6.2e-20 101.3 131 50.4
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-19 100.5 143 49.7
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-19 100.1 135 48.1
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.4e-19 99.4 142 48.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 2.4e-19 99.4 127 49.6
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 4.0e-19 98.6 139 46.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.0e-19 98.6 132 46.2
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 4.0e-19 98.6 132 46.2
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.3e-19 98.2 155 47.1
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 5.3e-19 98.2 130 49.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.9e-19 97.8 148 48.6
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.0e-19 97.4 148 45.9
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.2e-18 97.1 139 47.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-18 97.1 149 47.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-18 97.1 149 47.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-18 97.1 149 47.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.2e-18 97.1 135 47.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.5e-18 96.7 149 47.0
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.5e-18 96.7 142 49.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.6e-18 95.9 129 48.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.6e-18 95.9 125 49.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.6e-18 95.9 126 46.8
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.6e-18 95.9 126 46.8
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.4e-18 95.5 152 46.1
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 4.5e-18 95.1 76 63.2
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.5e-18 95.1 140 45.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 4.5e-18 95.1 151 43.7
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 5.8e-18 94.7 128 47.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 7.6e-18 94.4 146 45.9
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-17 94.0 149 46.3
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-17 93.6 129 49.6
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.3e-17 93.6 136 43.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.7e-17 93.2 137 47.4
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.7e-17 93.2 126 46.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.2e-17 92.8 126 50.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.9e-17 92.4 126 47.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.9e-17 92.4 139 43.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.8e-17 92.0 148 45.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.8e-17 92.0 139 41.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 6.5e-17 91.3 134 43.3
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.5e-17 91.3 133 45.1
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 8.4e-17 90.9 146 43.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.4e-17 90.9 139 49.6
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-16 90.5 138 47.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.1e-16 90.5 138 47.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.1e-16 90.5 138 47.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.1e-16 90.5 138 47.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.1e-16 90.5 132 47.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.1e-16 90.5 144 45.1
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.1e-16 90.5 138 45.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.1e-16 90.5 135 42.2
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.4e-16 90.1 95 55.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.4e-16 90.1 136 45.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.5e-16 89.4 79 59.5
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.5e-16 89.4 79 59.5
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.2e-16 89.0 139 48.2
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.2e-16 89.0 138 44.2
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.2e-16 89.0 75 61.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.2e-16 89.0 133 44.4
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.2e-16 88.6 130 46.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.2e-16 88.6 130 46.2
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.2e-16 88.6 127 47.2
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 7.1e-16 87.8 93 57.0
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 7.1e-16 87.8 151 45.0
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 9.3e-16 87.4 138 45.7
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-15 87.0 124 47.6
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.2e-15 87.0 78 60.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-15 87.0 85 61.2
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.1e-15 86.3 138 41.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.7e-15 85.9 77 61.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.7e-15 85.9 129 45.7
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.7e-15 85.9 130 43.8
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.5e-15 85.5 112 51.8
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.5e-15 85.5 105 53.3
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.5e-15 85.5 108 48.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.5e-15 85.5 145 42.8
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.6e-15 85.1 142 41.5
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 6.0e-15 84.7 139 44.6
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.9e-15 84.3 132 45.5
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.8e-14 83.2 133 45.1
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.8e-14 83.2 135 40.7
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.8e-14 83.2 125 44.0
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.3e-14 82.8 76 57.9
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.3e-14 82.8 157 35.0
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.0e-14 82.4 79 57.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.0e-14 82.4 74 60.8
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 3.0e-14 82.4 122 41.8
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.1e-14 81.6 131 39.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.7e-14 81.3 142 43.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.7e-14 81.3 153 43.1
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 6.7e-14 81.3 71 59.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 6.7e-14 81.3 75 52.0
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.7e-14 80.9 131 45.0
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-13 80.5 71 56.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.5e-13 80.1 75 58.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.5e-13 80.1 117 45.3
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.5e-13 80.1 92 47.8
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-13 79.3 103 49.5
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-13 79.3 85 51.8
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.5e-13 79.3 142 40.8
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-13 79.0 103 49.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 3.3e-13 79.0 103 49.5
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 4.3e-13 78.6 130 43.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.7e-13 78.2 139 43.9
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 7.4e-13 77.8 143 40.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.4e-13 77.8 119 43.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 7.4e-13 77.8 123 46.3
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 9.6e-13 77.4 129 41.9
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.3e-12 77.0 101 46.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-12 77.0 87 51.7
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.6e-12 76.6 80 52.5
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-12 76.6 112 46.4
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.1e-12 76.3 107 48.6
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.1e-12 76.3 130 40.8
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.8e-12 75.9 99 47.5
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.7e-12 75.5 140 39.3
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.8e-12 75.1 118 39.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 4.8e-12 75.1 86 52.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 8.2e-12 74.3 130 40.0
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.1e-11 73.9 78 53.8
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-11 73.9 80 57.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-11 73.6 131 43.5
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-11 73.2 87 51.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-11 72.4 140 38.6
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.3e-11 71.6 121 42.1
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 5.3e-11 71.6 116 43.1
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.3e-11 71.6 90 46.7
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 9.0e-11 70.9 92 45.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.2e-10 70.5 111 43.2
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-10 70.5 164 36.6
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.0e-10 69.7 105 43.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.5e-10 68.6 66 57.6
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.6e-10 67.8 91 39.6
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.2e-09 66.2 162 35.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.9e-09 65.9 132 37.1
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.9e-09 65.9 73 50.7
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.8e-09 65.5 96 42.7
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 6.5e-09 64.7 76 48.7
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 8.5e-09 64.3 93 45.2
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.4e-08 63.5 86 46.5
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-08 63.2 84 47.6
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.9e-08 63.2 89 42.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.5e-08 62.8 77 45.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 5.5e-08 61.6 73 49.3
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-07 60.5 69 55.1
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.1e-07 59.7 87 44.8
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.7e-07 59.3 77 46.8
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 3.6e-07 58.9 127 33.1
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 4.6e-07 58.5 81 42.0
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 7.9e-07 57.8 131 34.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.0e-06 57.4 71 49.3
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.3e-06 57.0 88 43.2


User provided reference genes

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