Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.9e-123 444.5 227 100.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.8e-110 402.1 232 90.9
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.9e-107 392.1 282 76.6
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.6e-97 358.2 318 64.8
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 3.8e-91 338.6 233 76.4
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.2e-82 308.9 227 71.4
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.0e-80 303.9 227 71.4
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.3e-79 298.9 231 68.4
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.3e-79 298.5 228 70.6
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.6e-79 298.1 230 70.0
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.3e-78 297.0 228 69.7
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.1e-78 296.2 229 69.4
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.8e-78 295.8 230 68.3
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.8e-78 295.8 228 69.7
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.8e-78 295.8 233 68.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.4e-77 293.5 228 68.0
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.8e-77 293.1 228 68.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.8e-77 293.1 228 67.5
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.8e-77 293.1 228 67.5
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.4e-77 292.7 230 69.1
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.1e-77 292.4 228 67.1
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 6.9e-77 291.2 225 66.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.6e-76 289.3 228 65.8
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.4e-76 288.9 227 67.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.5e-76 288.5 228 68.4
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 5.8e-76 288.1 227 67.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.6e-76 287.7 228 66.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.9e-75 285.8 229 66.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.9e-75 285.0 229 66.8
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.1e-74 283.9 231 65.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.5e-74 282.7 229 66.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.5e-74 281.6 227 66.1
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.2e-73 280.4 227 65.6
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.2e-73 280.4 235 66.0
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.5e-73 278.9 231 65.4
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.9e-73 277.7 219 68.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 7.9e-73 277.7 232 65.5
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.3e-72 276.9 235 65.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.9e-72 275.4 231 64.9
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 5.1e-72 275.0 231 63.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 5.1e-72 275.0 228 64.0
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.7e-72 274.2 226 66.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.7e-72 274.2 233 65.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 3.3e-71 272.3 231 65.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 7.4e-71 271.2 235 63.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 9.6e-71 270.8 226 66.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 6.2e-70 268.1 215 64.2
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 6.2e-70 268.1 233 63.5
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 6.2e-70 268.1 229 62.0
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.1e-69 267.3 233 61.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.4e-69 266.9 229 61.6
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.8e-69 266.5 229 61.6
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.4e-69 266.2 256 57.8
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.4e-69 266.2 227 63.4
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.1e-69 265.4 229 61.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 4.1e-69 265.4 229 63.3
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 5.3e-69 265.0 237 62.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 5.3e-69 265.0 232 63.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.3e-69 265.0 171 78.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 9.0e-69 264.2 228 63.2
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.6e-68 262.7 226 61.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.4e-68 262.3 231 64.1
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.5e-68 261.9 233 63.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.6e-68 261.2 228 61.0
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.0e-67 260.8 232 61.6
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.3e-67 260.4 229 62.9
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.9e-67 259.2 231 61.0
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.9e-67 259.2 234 61.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 5.0e-67 258.5 226 63.7
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 6.5e-67 258.1 237 60.8
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 8.4e-67 257.7 227 61.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 8.4e-67 257.7 227 60.8
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-66 256.9 223 61.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.4e-66 256.9 228 61.4
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.4e-66 256.9 223 61.4
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-66 256.5 229 61.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.5e-66 256.1 229 61.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.5e-66 256.1 230 60.9
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.2e-66 255.4 233 60.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.5e-66 255.0 227 60.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.5e-66 255.0 212 62.3
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 7.1e-66 254.6 229 61.1
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 7.1e-66 254.6 232 61.2
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.2e-65 253.8 197 65.5
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.1e-65 253.1 165 77.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.7e-65 252.7 231 61.5
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.5e-65 252.3 226 61.5
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 3.5e-65 252.3 230 58.7
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 7.9e-65 251.1 229 60.3
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 7.9e-65 251.1 224 62.5
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.0e-64 250.8 236 60.2
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-64 250.4 228 59.6
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-64 250.4 228 59.6
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.8e-64 250.0 234 58.1
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.8e-64 250.0 224 61.6
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.8e-64 250.0 203 66.0
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.3e-64 249.6 206 63.6
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 3.0e-64 249.2 224 62.1
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.1e-63 247.3 229 58.5
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.9e-63 246.5 223 61.0
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 5.7e-63 245.0 230 61.3
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.6e-62 243.4 220 59.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.2e-62 241.1 231 60.6
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-61 240.7 186 66.1
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.1e-61 239.2 169 69.8
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 4.1e-61 238.8 227 57.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 5.3e-61 238.4 233 58.8
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 9.0e-61 237.7 221 57.0
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.5e-60 236.9 230 58.7
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.6e-60 236.1 228 57.0
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.5e-60 235.3 232 56.0
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.7e-59 233.4 230 56.5
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.9e-59 232.6 262 51.5
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-58 230.3 224 57.1
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.0e-56 222.6 160 68.8
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.7e-56 221.5 179 62.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 8.8e-56 221.1 250 51.6
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.3e-55 219.2 198 60.6
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 5.7e-55 218.4 213 59.2
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 9.7e-55 217.6 228 53.9
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 9.7e-55 217.6 228 53.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.8e-54 216.1 177 66.7
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.7e-54 215.7 237 52.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-53 213.8 223 53.8
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.4e-53 213.8 225 55.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 6.5e-51 204.9 204 55.4
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.2e-49 200.7 215 54.0
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.6e-49 200.3 135 74.1
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.9e-49 198.0 230 50.9
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.6e-47 193.0 208 55.3
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.4e-47 192.2 228 50.0
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 4.4e-47 192.2 205 54.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.4e-47 191.4 230 50.0
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.4e-45 187.2 228 48.7
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 4.5e-44 182.2 172 59.3
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.1e-42 177.6 229 46.7
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.6e-41 173.7 127 66.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.0e-40 169.5 169 56.2
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.7e-38 162.5 108 73.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 4.8e-38 162.2 99 79.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.5e-34 150.6 150 58.7
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 4.2e-34 149.1 132 63.6
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.1e-33 145.2 131 60.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.8e-32 141.4 130 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.5e-31 140.6 133 57.9
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 4.8e-30 135.6 137 52.6
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.4e-29 132.1 192 44.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.5e-28 129.4 174 44.3
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.2e-23 114.4 77 71.4
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-23 114.4 71 80.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.5e-20 102.4 64 79.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 3.8e-19 99.4 95 58.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 3.8e-19 99.4 95 58.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-14 83.2 63 61.9
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 3.7e-14 82.8 133 35.3
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.0e-11 73.2 101 37.6
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 3.3e-10 69.7 105 36.2
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 1.5e-07 60.8 71 49.3


User provided reference genes

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