Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.6e-76 288.1 139 100.0
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-68 263.1 151 86.1
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 8.3e-65 250.4 139 87.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 7.8e-47 190.7 141 67.4
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.6e-44 181.8 126 68.3
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.4e-43 179.9 135 65.9
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.4e-43 179.9 139 63.3
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 2.0e-42 176.0 136 66.2
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.4e-42 174.9 138 63.8
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 9.8e-42 173.7 137 62.8
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.7e-41 172.9 139 63.3
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 6.4e-41 171.0 135 63.0
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 6.4e-41 171.0 138 63.0
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 6.4e-41 171.0 138 63.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.1e-40 170.2 139 61.2
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.4e-40 169.9 138 62.3
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 3.5e-39 165.2 139 61.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 3.5e-39 165.2 137 60.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.5e-39 165.2 139 59.7
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.3e-38 163.3 139 61.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.3e-38 163.3 139 61.9
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.7e-38 162.9 136 58.1
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-38 162.9 136 58.1
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 3.0e-38 162.2 139 62.6
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.9e-38 161.8 119 63.9
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.1e-37 160.2 139 62.6
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.9e-37 159.5 139 61.9
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.5e-37 159.1 139 59.0
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.3e-37 158.7 130 58.5
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-37 158.3 142 59.9
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.3e-37 158.3 142 59.9
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.3e-37 158.3 136 56.6
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 5.6e-37 157.9 131 61.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 5.6e-37 157.9 142 59.9
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 5.6e-37 157.9 139 57.6
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.6e-37 157.9 125 65.6
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 7.3e-37 157.5 138 59.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.1e-36 156.0 144 58.3
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.1e-36 156.0 134 60.4
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 2.8e-36 155.6 144 58.3
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 6.2e-36 154.5 130 60.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 8.1e-36 154.1 122 59.0
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 8.1e-36 154.1 139 58.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.1e-36 154.1 136 56.6
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.4e-35 153.3 130 60.8
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.3e-35 152.5 131 58.8
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 3.1e-35 152.1 138 58.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.0e-35 151.8 135 58.5
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.2e-35 151.4 140 58.6
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-34 150.2 142 56.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.4e-34 148.7 142 55.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 4.4e-34 148.3 142 55.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-33 146.7 142 54.9
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.3e-33 146.7 142 54.9
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.2e-33 146.0 142 54.2
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 3.7e-33 145.2 140 52.9
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 3.7e-33 145.2 144 53.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 4.9e-33 144.8 142 54.9
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.9e-33 144.8 95 76.8
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 8.3e-33 144.1 140 57.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.4e-32 143.3 139 56.8
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 3.2e-32 142.1 96 72.9
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.1e-32 141.7 139 56.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.4e-32 141.4 131 55.0
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.6e-31 139.8 139 55.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.6e-31 139.8 120 60.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.6e-31 139.8 128 57.8
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.1e-31 139.4 137 51.8
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.7e-31 139.0 132 53.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.3e-30 136.0 141 55.3
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.0e-30 135.6 119 60.5
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 6.6e-30 134.4 133 52.6
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.6e-30 134.0 126 55.6
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.5e-29 133.3 139 51.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.9e-29 132.9 113 61.9
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.5e-29 132.5 117 57.3
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 7.3e-29 131.0 139 52.5
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.3e-29 131.0 125 52.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-28 130.2 139 50.4
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.6e-28 129.8 125 55.2
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.6e-28 129.8 130 53.8
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.1e-28 129.4 140 50.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.1e-28 129.4 137 50.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.1e-28 129.4 133 48.9
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.8e-28 129.0 118 53.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.8e-28 129.0 123 56.9
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.6e-28 128.6 138 50.7
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.6e-28 128.6 137 51.1
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 4.7e-28 128.3 104 60.6
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 6.2e-28 127.9 140 50.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 8.1e-28 127.5 185 43.8
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 8.1e-28 127.5 139 49.6
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.1e-27 127.1 108 59.3
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.4e-27 126.7 134 50.0
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.4e-27 126.7 134 50.0
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.8e-27 126.3 113 59.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.8e-27 126.3 123 52.0
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.3e-27 125.9 119 53.8
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 4.0e-27 125.2 142 50.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 5.2e-27 124.8 121 55.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 5.2e-27 124.8 139 47.5
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.8e-27 124.4 135 49.6
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 8.9e-27 124.0 135 49.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-26 123.2 121 54.5
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.6e-26 122.5 119 52.9
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.4e-26 122.1 108 55.6
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 7.6e-26 120.9 128 53.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.3e-25 120.2 94 62.8
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.9e-25 118.2 157 45.9
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.4e-24 115.9 135 47.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 7.1e-24 114.4 88 64.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.1e-24 114.4 133 47.4
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 9.2e-24 114.0 140 47.1
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.6e-23 113.2 139 49.6
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.6e-23 113.2 112 57.1
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.1e-23 112.8 116 56.9
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.1e-23 112.8 71 70.4
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 7.8e-23 110.9 125 48.8
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-22 110.2 131 49.6
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-22 110.2 131 49.6
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.7e-22 109.8 139 43.9
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.9e-22 108.6 172 40.1
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.9e-22 108.6 131 46.6
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 3.9e-22 108.6 122 51.6
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.1e-21 107.1 74 62.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.9e-21 106.3 62 71.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.3e-21 105.5 60 75.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.3e-21 105.5 61 75.4
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 5.6e-21 104.8 80 65.0
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 7.3e-21 104.4 114 52.6
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.2e-20 103.6 68 66.2
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.4e-18 95.5 114 52.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.7e-17 93.2 61 67.2
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 7.1e-16 87.8 51 70.6
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 9.3e-16 87.4 52 71.2
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.6e-15 86.7 66 62.1
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 7.8e-15 84.3 113 46.9
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 3.9e-14 82.0 50 62.0
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 3.3e-13 79.0 68 64.7
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 7.3e-13 77.8 62 61.3
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-11 73.9 142 35.9
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.4e-11 73.6 103 41.7
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.1e-11 72.4 49 59.2
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 4.4e-10 68.6 44 65.9
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 5.8e-10 68.2 65 53.8
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.9e-09 65.9 104 45.2
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.6e-07 60.1 37 70.3
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.6e-07 60.1 91 46.2
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 3.5e-07 58.9 88 38.6
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.0e-07 58.2 87 44.8
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.9e-06 55.5 71 47.9


User provided reference genes

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