Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 6.3e-191 670.6 340 100.0
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.0e-144 516.2 403 72.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 7.8e-109 397.9 322 67.1
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.7e-108 394.4 321 67.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.6e-106 390.2 256 73.4
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.4e-105 387.1 311 67.5
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.8e-103 379.0 264 73.1
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.2e-102 375.9 325 61.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.0e-100 370.9 259 71.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.7e-100 370.2 301 63.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.5e-99 366.3 312 61.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.3e-99 365.5 324 59.6
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.1e-98 363.2 296 62.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.8e-98 362.8 257 68.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 8.1e-98 361.3 322 59.0
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-97 360.1 324 60.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.0e-97 359.0 260 66.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 4.0e-97 359.0 294 63.6
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 9.0e-97 357.8 260 66.2
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 9.0e-97 357.8 263 66.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-96 357.1 290 63.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-96 357.1 291 61.9
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.5e-96 357.1 265 67.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.4e-96 355.9 261 67.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 5.8e-96 355.1 262 66.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 5.8e-96 355.1 321 58.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 7.6e-96 354.8 322 59.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.3e-95 354.0 257 65.4
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-95 354.0 290 62.1
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.9e-95 352.8 259 65.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.9e-95 352.1 271 63.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.6e-93 347.1 301 60.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.1e-93 346.7 316 58.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.6e-93 345.5 329 56.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 7.9e-93 344.7 272 63.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-92 344.4 313 60.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.3e-92 343.2 263 63.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.9e-92 342.4 286 61.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.1e-91 340.9 313 57.2
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-91 340.9 338 55.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.5e-91 339.7 289 59.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.3e-91 339.3 323 57.6
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.3e-91 339.0 338 55.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 4.3e-91 339.0 315 58.7
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.6e-91 338.6 282 60.6
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 7.4e-91 338.2 264 62.9
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 9.6e-91 337.8 372 51.9
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.3e-90 337.4 259 65.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.6e-90 337.0 321 57.6
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 4.8e-90 335.5 301 58.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.4e-89 333.2 318 57.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 4.0e-89 332.4 280 60.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 6.9e-89 331.6 306 56.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.0e-88 330.1 319 54.9
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.9e-87 326.2 284 58.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.8e-87 325.9 222 71.2
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.5e-87 325.1 222 69.8
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 6.5e-87 325.1 318 53.1
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.4e-87 324.7 292 58.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 4.2e-86 322.4 325 53.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 5.5e-86 322.0 332 52.7
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 7.1e-86 321.6 257 62.6
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 9.3e-86 321.2 270 60.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.6e-85 320.5 217 71.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.5e-85 319.3 314 55.1
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.5e-85 319.3 278 57.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.0e-84 317.8 242 63.2
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.8e-84 317.0 219 68.5
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 5.1e-84 315.5 324 52.2
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.7e-84 314.7 225 65.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.8e-82 308.9 222 67.1
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.8e-82 308.9 308 54.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.8e-82 308.9 363 50.7
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.1e-81 307.8 301 55.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.4e-81 307.4 219 65.3
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-81 307.0 254 58.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.0e-81 304.7 261 58.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.2e-80 304.3 259 56.8
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-79 300.4 255 57.6
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-79 300.4 255 57.6
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.8e-79 299.3 255 57.6
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 2.5e-78 296.6 260 56.2
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.5e-78 296.6 295 53.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.5e-78 296.6 292 55.5
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 7.1e-78 295.0 259 57.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 9.3e-78 294.7 259 56.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.6e-77 292.4 259 56.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.6e-77 292.4 259 56.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.6e-77 292.4 259 56.4
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.6e-77 292.4 264 59.1
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.0e-76 291.2 260 56.2
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.0e-76 289.7 229 60.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 3.9e-76 289.3 290 51.4
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 6.7e-76 288.5 259 56.4
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.7e-76 288.5 259 56.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 6.7e-76 288.5 262 58.8
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.7e-76 288.1 290 52.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-75 287.7 261 55.9
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-75 287.3 258 56.2
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.4e-75 285.0 263 57.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 9.7e-75 284.6 263 58.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.7e-75 284.6 297 52.5
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.7e-74 282.7 258 55.4
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.7e-74 282.7 419 43.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.8e-74 282.3 265 56.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.8e-74 282.3 257 52.5
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 6.3e-74 282.0 262 57.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.2e-74 281.6 254 55.9
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.8e-73 280.4 254 53.9
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.4e-73 280.0 309 50.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.3e-73 278.9 235 62.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.9e-73 278.5 301 53.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 6.9e-73 278.5 267 53.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-72 277.7 221 60.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.6e-72 276.6 254 55.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.7e-71 273.9 232 56.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.6e-69 267.3 221 61.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-68 264.2 265 54.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.7e-67 258.8 218 58.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.7e-67 258.1 218 58.7
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 6.9e-65 251.9 225 56.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.0e-63 248.1 280 49.3
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.9e-63 246.5 200 63.5
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 5.0e-63 245.7 252 51.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 4.7e-61 239.2 219 55.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.3e-58 228.8 220 54.1
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-57 227.6 209 56.5
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.4e-57 226.9 217 54.8
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 9.1e-57 224.9 206 55.3
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.2e-56 224.6 206 54.9
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.5e-56 224.2 206 55.8
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.0e-56 223.8 215 53.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-56 223.4 206 54.9
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-55 221.1 206 54.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.9e-55 219.9 206 54.9
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.8e-55 219.5 206 55.3
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 8.5e-55 218.4 304 42.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.3e-49 199.1 195 51.8
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.1e-49 198.4 166 59.6
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.6e-48 197.6 227 48.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.7e-45 186.8 199 50.8
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-45 185.7 166 54.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 6.1e-45 185.7 223 49.8
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.2e-43 181.4 235 45.5
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 9.8e-43 178.3 136 62.5
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.8e-42 176.0 127 66.9
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.2e-40 171.4 188 54.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.7e-40 168.7 140 60.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.4e-36 157.9 258 44.2
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.0e-36 156.8 258 44.6
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-35 154.8 127 63.8
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 7.5e-35 152.1 122 64.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.3e-34 151.4 261 36.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-33 147.9 117 62.4
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.7e-31 141.0 184 45.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.3e-30 136.7 227 37.9
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.6e-30 136.0 136 49.3
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.1e-29 134.0 251 34.7
Potri.010G167150 Populus trichocarpa HOM05D001860 ORTHO05D004922 8.0e-29 132.1 101 72.3
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.3e-26 124.8 197 38.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.3e-26 122.1 166 42.8
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.1e-25 119.8 83 72.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.7e-24 117.1 76 73.7
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.5e-22 111.3 89 55.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 8.9e-20 102.1 84 56.0
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.4e-17 94.0 85 56.5
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 4.6e-16 89.7 89 51.7
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.3e-14 83.6 179 38.5
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.2e-11 75.1 205 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 2.6e-11 73.9 186 33.9
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.1e-09 68.6 152 30.9
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 4.1e-09 66.6 84 40.5
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 5.4e-09 66.2 142 35.2
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 2.1e-08 64.3 135 35.6
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 3.0e-07 60.5 181 30.4
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.5e-06 58.2 59 49.2
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 3.3e-06 57.0 74 45.9


User provided reference genes

Program Settings