Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.2e-44 181.0 94 100.0
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.5e-38 162.5 92 91.3
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.3e-32 142.9 94 78.7
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 4.0e-31 137.9 94 74.5
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 6.9e-23 110.5 95 64.2
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 8.4e-21 103.6 95 58.9
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 2.5e-20 102.1 95 57.9
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.5e-20 100.9 96 61.5
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 3.0e-18 95.1 97 55.7
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.9e-18 94.7 95 56.8
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.7e-18 94.0 95 54.7
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.5e-17 92.8 87 59.8
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.3e-17 91.3 94 54.3
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 9.7e-17 90.1 95 55.8
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 9.7e-17 90.1 93 50.5
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 6.3e-16 87.4 98 55.1
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.4e-15 86.3 94 53.2
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.0e-14 82.4 93 51.6
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.7e-14 80.5 95 53.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.7e-14 80.5 95 53.7
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.3e-13 79.7 97 49.5
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.7e-13 79.3 92 52.2
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.7e-13 79.3 92 52.2
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-13 79.3 97 49.5
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.9e-13 78.6 95 52.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 6.5e-13 77.4 97 50.5
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.9e-12 75.9 95 46.3
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-12 75.1 97 47.4
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 5.5e-12 74.3 96 50.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.2e-12 73.9 99 46.5
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.2e-11 73.2 89 46.1
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.0e-10 70.1 88 50.0
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 1.4e-10 69.7 107 43.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.8e-10 69.3 84 50.0
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 2.3e-10 68.9 88 46.6
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 2.3e-10 68.9 96 46.9
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 2.3e-10 68.9 90 48.9
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.9e-10 68.2 95 44.2
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.9e-10 68.2 96 47.9
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 3.9e-10 68.2 94 44.7
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.5e-09 66.2 94 43.6
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.5e-09 66.2 90 46.7
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 1.5e-09 66.2 96 47.9
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.5e-09 65.5 88 46.6
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 2.5e-09 65.5 104 41.3
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.3e-09 65.1 88 47.7
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.3e-09 65.1 89 43.8
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 3.3e-09 65.1 109 42.2
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.3e-09 64.7 88 46.6
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 4.3e-09 64.7 88 44.3
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 7.4e-09 63.9 94 44.7
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.3e-08 63.2 94 39.4
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 2.2e-08 62.4 96 42.7
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 2.8e-08 62.0 88 40.9
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 2.8e-08 62.0 78 46.2
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 3.7e-08 61.6 88 47.7
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 3.7e-08 61.6 98 39.8
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 3.7e-08 61.6 93 39.8
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 4.8e-08 61.2 95 44.2
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.8e-08 61.2 96 43.8
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 4.8e-08 61.2 109 41.3
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 6.3e-08 60.8 85 43.5
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 96 43.8
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.8e-07 59.3 90 43.3
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-07 59.3 95 41.1
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.8e-07 59.3 95 43.2
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 2.4e-07 58.9 96 40.6
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.4e-07 58.9 96 42.7
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.1e-07 58.5 95 41.1
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 5.3e-07 57.8 95 43.2
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.9e-07 57.4 94 41.5
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 6.9e-07 57.4 86 47.7
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.2e-06 56.6 94 41.5
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.2e-06 56.6 98 42.9
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.5e-06 56.2 90 42.2
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.5e-06 56.2 94 38.3
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.0e-06 55.8 79 51.9
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.6e-06 55.5 86 39.5
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 2.6e-06 55.5 96 36.5
Migut.E00089 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.4e-06 55.1 101 42.6
Glyma.01G047800 Glycine max HOM05D015099 ORTHO05D008288 3.4e-06 55.1 107 39.3
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 5.9e-06 54.3 117 31.6
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 7.7e-06 53.9 98 38.8


User provided reference genes

Program Settings