Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1159.4 564 100.0
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1136.3 564 97.5
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1133.6 562 97.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1116.7 562 96.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 0.0e+00 1085.9 563 91.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1081.6 561 91.6
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1075.1 564 91.7
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 3.9e-312 1074.3 561 91.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 7.7e-312 1072.8 561 91.3
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.9e-311 1071.6 561 90.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.3e-310 1068.9 561 90.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.9e-310 1067.8 561 90.6
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.9e-310 1067.8 561 90.6
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 8.5e-310 1066.2 561 90.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.4e-309 1065.4 561 90.7
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 561 89.8
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 7.2e-309 1063.1 561 90.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 561 90.0
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 562 90.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 7.9e-308 1059.7 564 91.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 562 90.4
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 562 89.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 561 89.7
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 562 89.7
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 562 90.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 561 90.6
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 564 89.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 561 90.4
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 561 90.6
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 561 90.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.0e-306 1055.0 561 89.3
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.4e-306 1053.9 562 89.5
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 561 89.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 561 89.5
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 564 89.7
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 9.7e-306 1052.7 561 89.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 561 89.5
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 562 89.1
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 8.2e-305 1049.7 561 89.3
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 562 89.1
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 561 90.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 561 88.4
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.6e-303 1044.6 561 88.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.5e-303 1044.3 561 88.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.5e-303 1044.3 561 88.2
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 561 88.9
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 5.9e-303 1043.5 561 89.8
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 561 88.8
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 87.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 561 87.7
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 561 88.8
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 4.2e-301 1037.3 561 87.5
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.5e-301 1036.9 561 87.9
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 562 89.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 561 87.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 561 87.7
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 562 88.6
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 561 87.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 561 87.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 565 87.8
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 561 87.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.8e-299 1029.6 552 87.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 562 87.0
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.3e-298 1027.7 566 87.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.8e-297 1024.6 561 85.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 561 85.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 552 87.3
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 554 88.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 561 85.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.5e-295 1017.3 562 87.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 561 85.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.0e-294 1016.1 562 86.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.2e-294 1015.0 564 87.1
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 550 87.6
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.8e-294 1014.2 562 85.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 562 87.0
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.5e-293 1010.4 552 86.8
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.2e-293 1010.0 560 85.7
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.7e-292 1008.1 551 87.3
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 563 85.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 563 85.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 563 85.4
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-291 1006.1 563 85.4
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 563 85.3
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 565 85.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 563 85.1
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.0e-291 1004.6 563 85.1
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.2e-291 1003.8 563 85.1
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 563 85.1
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 563 84.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 563 84.9
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 563 85.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 550 86.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 563 84.7
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 549 86.9
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.3e-289 996.9 549 86.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 5.4e-288 993.8 561 84.8
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.1e-288 993.0 563 85.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.6e-287 992.3 534 88.2
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.6e-287 992.3 563 83.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 2.0e-287 991.9 563 84.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 3.5e-287 991.1 563 83.3
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 5.9e-287 990.3 563 84.9
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 7.7e-287 989.9 562 83.8
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.0e-286 989.6 563 83.3
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.3e-286 989.2 563 84.7
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.8e-286 987.6 561 83.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 561 84.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 8.5e-286 986.5 563 83.7
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 4.2e-285 984.2 562 83.6
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 4.2e-285 984.2 562 83.6
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 7.2e-285 983.4 562 85.1
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.0e-284 979.9 562 84.5
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-283 979.5 562 83.3
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.0e-283 978.0 558 84.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.2e-281 971.8 561 82.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.8e-281 971.5 562 83.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.0e-280 966.8 556 82.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.7e-278 962.2 552 83.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.0e-275 951.4 565 83.0
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 9.8e-274 946.4 551 80.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.0e-270 936.4 559 79.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.9e-270 934.5 554 79.6
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.6e-270 933.7 554 79.1
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.4e-267 926.0 553 79.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 9.8e-266 919.8 562 79.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 4.9e-265 917.5 524 83.2
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.6e-263 912.5 561 77.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.0e-263 912.1 556 77.5
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.9e-262 907.9 568 76.4
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.2e-260 900.6 560 75.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.2e-256 888.3 564 76.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.0e-255 884.0 561 75.4
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.0e-254 881.7 557 79.0
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.6e-250 868.6 561 74.2
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.8e-250 867.5 557 75.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.9e-248 862.4 553 76.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.8e-244 848.6 466 85.8
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 7.8e-239 830.5 561 71.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 4.3e-229 798.1 424 90.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.1e-214 748.0 562 67.3
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.7e-214 747.7 425 83.5
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.4e-208 729.9 562 66.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-190 670.2 373 83.6
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 6.3e-180 634.8 541 56.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.5e-176 623.6 417 75.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.9e-169 599.4 328 83.8
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.0e-167 591.3 523 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.3e-166 589.7 488 55.9
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.5e-160 570.5 291 89.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.6e-151 540.4 418 60.3
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.8e-138 495.0 552 50.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-136 490.7 565 50.1
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.7e-135 485.7 318 73.6
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.7e-129 464.9 467 55.5
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.7e-89 332.4 549 38.8
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.8e-87 326.2 212 74.5
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.1e-83 315.1 491 37.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-68 264.6 195 65.6
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 9.4e-67 258.8 195 64.6
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 3.1e-62 243.8 166 67.5
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 9.5e-51 205.7 133 78.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.0e-48 198.0 128 78.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.4e-48 197.2 115 81.7
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-46 190.7 166 63.9
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-45 188.7 166 63.9
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.0e-45 188.0 166 63.9
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.3e-44 184.5 166 63.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 8.6e-44 182.6 117 70.9
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.0e-40 171.4 324 33.6
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.3e-33 147.9 496 26.4
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.0e-32 144.8 87 75.9
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-31 141.4 213 43.2
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.1e-27 129.0 76 71.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-27 127.9 83 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.1e-26 124.8 85 64.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 3.1e-25 120.9 184 44.0
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 7.8e-21 106.3 166 42.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 2.1e-18 98.2 103 48.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.6e-13 80.5 46 73.9
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 4.2e-06 57.4 32 81.2
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 4.2e-06 57.4 32 81.2


User provided reference genes

Program Settings