Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1533.1 756 100.0
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 0.0e+00 1416.0 757 92.7
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1344.3 756 86.5
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 0.0e+00 1309.3 815 79.6
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 0.0e+00 1154.8 747 74.4
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 0.0e+00 1079.3 739 70.6
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1076.2 754 69.2
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.6e-311 1071.2 702 72.1
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.8e-310 1068.9 702 72.2
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.5e-306 1054.3 706 71.1
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 7.6e-306 1053.5 740 68.8
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 7.9e-303 1043.5 740 67.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.5e-301 1039.3 699 70.1
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.3e-301 1037.7 738 68.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.4e-298 1028.1 742 66.3
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 5.9e-298 1027.3 742 66.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.3e-297 1026.2 757 66.6
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 3.2e-296 1021.5 741 67.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.7e-295 1018.5 745 64.6
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.0e-293 1012.3 702 67.8
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 5.7e-293 1010.7 700 68.3
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.7e-289 999.2 746 66.6
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 5.1e-286 987.6 707 68.0
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.3e-284 983.0 708 65.7
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.0e-283 977.2 736 65.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.5e-282 976.1 702 65.5
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.5e-282 974.5 745 65.5
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.0e-281 973.4 703 65.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.4e-280 969.5 725 64.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.4e-280 969.5 705 65.1
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 5.2e-278 961.1 746 63.0
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 2.0e-277 959.1 753 63.7
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.6e-277 958.7 702 66.7
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.3e-277 958.4 701 65.2
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 9.7e-277 956.8 699 65.5
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.1e-275 953.4 707 65.1
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.4e-275 953.0 705 64.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.0e-274 949.1 747 61.8
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.3e-273 946.4 702 63.5
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 6.5e-273 944.1 704 65.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 8.5e-273 943.7 702 64.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.5e-272 943.0 706 64.9
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 5.5e-272 941.0 740 62.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.6e-271 939.5 739 62.2
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.0e-270 936.8 704 64.5
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 2.3e-270 935.6 756 60.7
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 7.5e-269 930.6 697 63.3
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 9.7e-269 930.2 738 61.8
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 8.3e-268 927.2 748 61.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 9.1e-267 923.7 702 64.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.9e-264 916.0 725 60.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 6.1e-263 911.0 710 62.8
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 8.0e-263 910.6 744 60.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.8e-262 907.1 616 68.3
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.1e-259 900.2 741 62.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.1e-259 900.2 702 62.4
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 9.1e-259 897.1 712 62.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.6e-258 896.3 621 69.9
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.7e-258 894.0 737 60.7
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 3.8e-257 891.7 744 59.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 5.0e-257 891.3 712 61.5
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-256 889.8 710 60.1
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 4.2e-256 888.3 741 59.6
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.8e-255 885.6 701 60.9
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.6e-253 879.0 712 61.9
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 5.7e-253 877.9 701 61.2
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 5.4e-251 871.3 701 60.2
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 7.0e-251 870.9 700 60.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 8.6e-249 864.0 665 62.6
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.6e-247 859.8 698 59.6
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.8e-247 859.0 759 56.8
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.8e-246 856.3 749 56.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.5e-245 853.2 747 56.4
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 2.6e-245 852.4 698 58.6
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 3.2e-243 845.5 752 56.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.9e-241 838.6 714 59.0
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.9e-236 822.4 740 55.9
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.9e-236 822.4 699 57.4
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 3.9e-233 812.0 698 57.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 8.3e-228 794.3 703 55.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.2e-226 790.4 682 56.0
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 4.6e-226 788.5 647 62.1
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 6.0e-226 788.1 750 53.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.3e-225 786.9 726 53.3
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.3e-225 786.2 548 67.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.5e-224 782.7 716 52.9
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.3e-224 782.3 742 53.6
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.7e-220 770.0 663 57.0
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 7.1e-219 764.6 633 58.3
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 5.3e-214 748.4 720 55.0
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.2e-210 737.3 694 54.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.7e-210 736.1 697 53.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.4e-198 696.4 712 48.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 3.7e-191 672.5 722 48.9
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.6e-186 655.6 701 50.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 3.0e-185 652.9 654 54.3
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.8e-182 643.7 576 55.4
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.3e-175 620.9 480 61.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 6.8e-153 545.4 431 62.2
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 6.3e-151 538.9 401 65.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 7.7e-149 531.9 499 53.5
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 3.3e-131 473.4 682 38.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.4e-127 459.1 711 36.1
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.7e-119 434.5 779 34.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 8.6e-116 422.2 712 34.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.5e-115 420.6 751 34.6
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.2e-114 418.3 365 55.6
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 9.9e-112 408.7 639 36.3
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.5e-109 400.2 809 32.3
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.8e-106 390.6 345 57.1
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.8e-106 390.6 762 33.1
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-91 340.9 334 53.3
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.0e-81 307.0 285 55.4
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.2e-69 268.9 189 66.1
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 9.0e-65 252.7 176 67.6
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 7.7e-64 249.6 567 29.6
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.9e-62 245.0 179 67.0
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.6e-61 241.9 167 65.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 6.9e-57 226.5 176 65.3
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.1e-54 219.2 339 37.2
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.7e-40 171.4 495 27.7
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 8.0e-37 159.8 124 67.7
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.9e-30 138.7 127 46.5
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 5.9e-24 117.1 108 50.9
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.0e-23 114.0 75 69.3
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.2e-18 98.6 89 51.7
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.2e-17 94.7 89 48.3
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.7e-15 89.0 400 24.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-13 82.8 95 44.2
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.4e-11 74.3 104 46.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.7e-08 65.1 60 60.0
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-07 62.0 39 74.4
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.3e-07 62.0 47 57.4
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.6e-07 60.1 48 60.4


User provided reference genes

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