Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.7e-155 550.4 276 100.0
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 4.8e-141 504.6 276 92.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.3e-127 459.1 252 92.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 5.2e-111 404.8 276 74.6
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.7e-101 373.2 276 68.1
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 4.9e-101 371.7 276 68.1
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.4e-100 369.4 278 68.7
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 5.4e-100 368.2 276 69.6
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.0e-99 366.3 278 69.1
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 2.7e-99 365.9 276 66.3
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.5e-99 365.5 277 67.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.3e-98 363.6 278 68.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.9e-98 362.1 278 68.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.1e-97 360.5 277 66.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.5e-97 360.1 277 67.1
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 2.5e-97 359.4 276 66.3
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.5e-97 359.4 276 65.9
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.5e-97 357.5 278 67.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.2e-96 357.1 276 65.2
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.6e-96 356.7 276 64.1
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 3.6e-96 355.5 277 66.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 6.2e-96 354.8 278 67.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 6.2e-96 354.8 273 66.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 8.1e-96 354.4 278 67.3
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.1e-95 354.0 276 65.9
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 4.0e-95 352.1 272 65.4
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 6.8e-95 351.3 276 64.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.0e-94 349.7 275 67.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 3.4e-94 349.0 276 65.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 4.4e-94 348.6 275 66.5
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 6.4e-93 344.7 280 63.2
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.4e-92 343.6 277 64.6
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.1e-92 342.0 273 65.2
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 7.1e-92 341.3 273 64.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.2e-91 340.5 276 62.7
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-91 340.1 277 63.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.6e-91 338.6 277 66.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.8e-91 337.8 253 69.2
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.7e-90 336.7 276 62.7
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.1e-90 335.1 253 68.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 5.1e-90 335.1 275 64.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.9e-89 333.2 276 63.0
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.9e-89 333.2 272 64.7
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.9e-89 333.2 215 78.1
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 3.3e-89 332.4 276 62.3
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.3e-89 332.4 273 64.8
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 4.3e-89 332.0 280 61.1
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 4.3e-89 332.0 234 70.1
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 4.3e-89 332.0 243 69.5
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.6e-89 331.6 276 59.8
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.6e-89 331.6 220 75.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 7.3e-89 331.3 276 59.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 9.5e-89 330.9 245 68.6
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 2.1e-88 329.7 252 66.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.1e-88 329.7 243 69.5
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 3.6e-88 328.9 276 60.9
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 3.6e-88 328.9 276 60.9
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 4.7e-88 328.6 279 62.7
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 6.2e-88 328.2 276 60.5
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.1e-87 327.4 243 70.0
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.1e-87 327.4 276 62.7
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.8e-87 326.6 208 78.8
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.0e-87 325.5 276 59.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.0e-87 325.5 272 62.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 4.0e-87 325.5 235 68.9
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 6.8e-87 324.7 279 62.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.5e-86 323.6 215 75.3
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.5e-86 323.6 234 70.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.4e-86 322.4 207 76.8
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.4e-86 322.0 254 64.6
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 4.4e-86 322.0 221 72.4
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 4.4e-86 322.0 273 59.7
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 9.9e-86 320.9 261 62.1
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 9.9e-86 320.9 277 61.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.3e-85 320.5 205 75.6
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.2e-85 319.7 224 70.1
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 4.9e-85 318.5 204 76.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.4e-85 318.2 236 68.2
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.1e-84 317.4 274 62.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.1e-84 317.4 277 60.3
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.1e-84 317.4 217 71.4
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.4e-84 317.0 244 64.8
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.9e-84 316.6 252 64.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.9e-84 316.6 234 67.1
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.2e-84 315.8 207 73.9
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 7.1e-84 314.7 237 67.1
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.6e-83 313.5 207 77.3
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.1e-83 313.2 274 62.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.7e-83 312.8 252 63.9
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.7e-83 312.8 267 63.3
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.8e-83 311.2 207 73.4
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.0e-82 310.8 276 60.5
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.3e-82 309.7 253 62.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.3e-82 309.7 276 60.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 3.0e-82 309.3 274 59.9
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.0e-82 309.3 245 64.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.1e-81 307.4 285 60.0
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 3.3e-81 305.8 255 62.7
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 4.7e-80 302.0 212 70.8
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 6.2e-80 301.6 253 62.1
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.4e-79 300.4 204 74.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-79 299.7 245 63.3
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.8e-78 295.0 205 74.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 5.8e-78 295.0 264 58.0
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.3e-77 293.9 218 66.5
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 6.2e-72 275.0 238 58.4
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.2e-72 275.0 196 71.9
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.0e-71 271.2 254 58.7
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.3e-69 267.3 272 52.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.9e-69 265.4 206 64.6
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 6.4e-69 265.0 186 69.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.2e-67 260.8 244 57.4
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.1e-67 260.0 208 62.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 9.6e-65 251.1 213 62.4
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 3.7e-64 249.2 254 52.4
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 2.8e-56 223.0 210 54.3
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.4e-55 220.7 182 65.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 9.0e-55 218.0 209 52.6
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.5e-54 217.2 207 53.1
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 4.9e-53 212.2 212 52.8
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.7e-51 206.5 212 52.4
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.6e-51 205.7 143 75.5
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 7.9e-51 204.9 196 56.6
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.8e-48 195.7 125 72.0
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.8e-47 193.7 199 53.8
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.5e-46 190.7 249 40.6
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 4.6e-43 179.1 233 39.9
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.0e-42 176.4 130 73.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 5.0e-37 159.1 212 39.6
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.9e-36 157.1 109 71.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.7e-29 134.0 139 54.7
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.9e-28 130.6 102 67.6
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 9.7e-25 118.2 104 59.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 2.7e-19 100.1 88 62.5
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.0e-18 98.2 144 38.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 8.8e-18 95.1 110 50.0
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 5.9e-14 82.4 133 42.9
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 6.8e-10 68.9 44 77.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 6.3e-08 62.4 60 55.0


User provided reference genes

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