Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 7.8e-305 1049.7 538 100.0
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.0e-240 835.1 537 80.6
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.4e-237 825.5 545 81.1
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 9.5e-234 813.5 545 78.5
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.0e-199 699.5 546 66.3
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.9e-189 666.4 546 64.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.2e-183 647.1 549 64.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.1e-181 637.9 546 62.1
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 7.9e-180 634.4 531 63.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.8e-179 633.3 536 63.2
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 4.3e-178 628.6 535 62.8
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.8e-176 623.2 536 62.7
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-175 620.5 531 61.6
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.6e-175 619.4 553 58.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 7.6e-175 617.8 531 61.6
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.0e-174 617.5 555 60.7
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.9e-173 613.2 543 60.6
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.3e-171 607.1 570 57.9
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 2.3e-171 606.3 528 62.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 3.0e-171 605.9 559 59.2
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.0e-171 605.9 515 61.6
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.1e-171 605.1 531 60.5
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 8.7e-171 604.4 559 59.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.3e-170 602.1 551 58.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 4.3e-170 602.1 547 59.8
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 6.2e-169 598.2 542 58.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-168 596.7 542 58.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.4e-168 596.3 531 61.2
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.0e-168 595.5 542 58.3
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 6.9e-168 594.7 529 60.1
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 9.0e-168 594.3 551 58.4
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-167 592.8 538 58.4
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 5.0e-166 588.6 555 60.0
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 6.5e-166 588.2 555 57.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 8.4e-166 587.8 532 60.2
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.1e-165 587.4 520 58.5
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.2e-164 583.9 515 60.0
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.3e-163 580.5 528 58.7
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 3.0e-163 579.3 516 59.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 3.0e-163 579.3 534 59.0
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.9e-163 578.9 531 56.9
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 8.7e-163 577.8 514 60.1
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.3e-162 575.9 475 64.4
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.3e-162 575.9 534 57.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 7.4e-162 574.7 535 57.4
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.3e-161 573.9 503 59.8
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 4.8e-161 572.0 534 57.9
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 8.2e-161 571.2 526 57.8
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.4e-160 570.5 532 57.7
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 5.3e-160 568.5 544 58.3
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.2e-159 567.4 515 58.4
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.5e-157 559.7 556 56.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.5e-157 559.7 541 56.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.5e-157 558.5 507 56.0
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.1e-156 556.6 520 58.3
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.6e-156 555.8 536 56.7
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 6.1e-156 555.1 550 57.3
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 7.9e-156 554.7 539 57.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 5.1e-155 552.0 532 57.1
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.7e-155 551.6 543 53.4
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.5e-154 549.7 524 57.1
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.7e-154 548.5 543 53.4
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 8.2e-153 544.7 533 55.3
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.9e-152 541.6 532 56.6
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.5e-151 540.4 541 53.8
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-151 540.4 545 55.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.6e-151 539.7 466 60.7
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.4e-151 539.3 525 53.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.7e-150 537.0 553 54.6
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.8e-150 535.8 534 53.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 5.0e-150 535.4 514 56.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.4e-149 533.9 537 51.8
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.2e-149 532.7 537 54.0
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 5.5e-149 531.9 566 53.4
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 9.4e-149 531.2 532 53.0
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.4e-149 531.2 526 53.8
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 9.4e-149 531.2 529 54.6
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-148 530.8 537 54.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.6e-148 530.4 527 54.3
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.7e-148 529.6 506 53.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 2.7e-148 529.6 487 55.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 2.7e-148 529.6 487 55.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.7e-148 529.6 487 55.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 7.9e-148 528.1 536 53.4
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-147 527.3 526 53.8
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-147 526.9 537 53.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 3.0e-147 526.2 536 53.5
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 3.9e-147 525.8 489 56.2
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 5.1e-147 525.4 526 53.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.7e-147 525.0 520 53.8
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 8.8e-147 524.6 475 56.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 8.8e-147 524.6 489 55.6
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 8.8e-147 524.6 489 55.6
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.0e-146 523.5 495 56.6
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 5.7e-146 521.9 527 53.1
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.4e-146 521.5 534 50.9
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.8e-144 516.9 545 51.6
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 9.1e-144 514.6 498 54.4
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.9e-143 511.9 526 53.2
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.0e-142 511.1 538 52.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.2e-142 510.0 539 54.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.9e-142 509.6 497 56.3
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 5.0e-142 508.8 559 51.3
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.1e-141 507.7 474 55.1
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.1e-141 507.7 525 52.6
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 7.2e-141 505.0 489 56.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 7.2e-141 505.0 559 51.3
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.4e-141 504.6 563 52.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.6e-140 503.8 505 54.5
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.0e-139 501.1 525 52.2
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.3e-139 500.0 517 55.1
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.3e-138 496.1 576 50.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.7e-137 493.8 556 49.1
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.7e-137 493.8 535 52.3
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.0e-134 484.6 429 60.1
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.2e-134 483.4 498 51.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.2e-133 478.4 478 55.0
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 8.8e-131 471.5 511 51.3
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 4.4e-130 469.2 536 50.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.8e-129 466.5 537 48.8
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.1e-128 461.5 513 49.9
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.5e-127 459.5 422 58.5
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.6e-116 424.1 435 53.1
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.4e-115 421.0 487 49.1
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 6.8e-115 418.7 437 50.8
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.0e-114 417.2 461 49.7
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.0e-114 417.2 461 49.7
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.7e-111 406.8 526 45.2
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.2e-108 395.6 498 45.2
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.2e-107 392.5 377 52.5
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 5.2e-107 392.5 520 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.9e-104 384.0 517 43.3
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 3.0e-102 376.7 601 38.8
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 3.4e-98 363.2 503 44.3
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 4.0e-91 339.7 528 42.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.4e-90 336.3 280 58.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.9e-74 282.0 524 38.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.1e-67 261.9 498 34.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 8.7e-62 242.3 343 43.7
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.3e-60 238.4 589 32.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.4e-51 208.4 285 45.6
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 4.2e-48 196.8 168 56.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.8e-46 191.4 195 47.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-31 142.1 121 62.0
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 9.4e-24 115.9 162 37.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.6e-18 98.6 64 71.9
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-13 81.6 53 71.7
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-09 67.0 42 69.0


User provided reference genes

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