Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.1e-276 954.5 480 100.0
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-254 882.5 480 92.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 9.0e-244 846.7 480 88.1
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 7.1e-241 837.0 480 86.0
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.5e-211 739.6 478 75.5
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.5e-206 723.0 478 74.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.4e-198 695.3 467 73.4
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 9.1e-196 687.2 467 72.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.2e-195 686.8 484 70.9
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.2e-195 686.8 466 73.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.2e-195 686.8 485 70.1
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 5.9e-195 684.5 466 72.7
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 7.7e-195 684.1 466 72.1
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.9e-194 682.2 467 72.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.8e-194 681.8 467 70.2
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 5.5e-193 677.9 490 69.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.4e-193 677.2 483 70.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.2e-192 676.8 467 71.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.7e-192 675.6 467 71.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.0e-191 673.7 481 70.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.8e-191 672.9 467 69.8
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.8e-191 671.0 467 71.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.8e-191 670.6 467 72.2
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.3e-189 666.8 464 69.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-189 666.0 467 71.5
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-189 666.0 467 71.7
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.1e-188 660.6 480 68.3
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-187 660.2 477 69.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.6e-187 659.8 475 68.8
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.9e-187 657.9 467 69.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.0e-186 657.1 465 68.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-186 655.6 480 68.5
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 5.0e-186 654.8 480 67.9
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.6e-186 654.1 467 69.4
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 7.2e-185 651.0 466 68.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-183 647.1 475 68.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 4.4e-182 641.7 474 65.8
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 5.7e-182 641.3 470 66.6
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.2e-181 639.4 471 69.0
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-179 633.6 471 67.5
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.2e-179 633.6 494 65.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.3e-178 630.2 479 64.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.9e-178 629.0 480 64.8
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.0e-178 628.2 466 66.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 8.6e-178 627.5 471 64.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.9e-177 626.3 465 66.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 9.5e-177 624.0 453 69.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.8e-176 622.5 468 66.0
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.2e-175 618.2 472 64.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.3e-173 613.6 480 64.8
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.2e-173 612.8 461 66.6
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.9e-169 599.7 479 64.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 7.3e-169 597.8 461 65.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 9.5e-169 597.4 470 62.8
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.6e-168 596.7 475 62.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 8.0e-168 594.3 470 63.4
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-167 594.0 482 62.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 3.4e-166 589.0 477 63.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 8.3e-165 584.3 471 62.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.7e-163 579.3 478 61.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 3.9e-162 575.5 479 58.9
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 8.6e-162 574.3 474 61.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 7.3e-161 571.2 467 59.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.7e-160 568.5 465 61.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 8.1e-160 567.8 472 61.0
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-159 567.4 468 61.3
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.7e-157 560.1 469 60.6
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-157 559.7 485 59.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 8.3e-157 557.8 468 57.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-155 553.5 474 59.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.0e-155 551.6 476 58.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.9e-154 548.9 474 59.1
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.9e-154 548.9 483 58.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 5.6e-153 545.0 467 58.7
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 9.6e-153 544.3 470 58.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.2e-152 541.6 465 58.5
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.4e-151 540.4 464 58.8
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.8e-151 538.1 470 56.6
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 8.9e-151 537.7 479 57.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.4e-150 535.8 467 58.5
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 5.8e-150 535.0 473 59.4
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.1e-148 530.8 455 58.2
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.4e-148 529.6 467 55.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.2e-148 528.9 469 57.4
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 7.1e-148 528.1 426 60.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.6e-146 521.5 467 56.5
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.9e-145 520.0 473 57.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.8e-144 515.4 467 56.7
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.1e-143 512.7 467 55.7
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-142 510.8 467 55.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.2e-141 506.5 467 55.0
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.4e-141 505.0 468 54.9
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-140 503.8 467 56.5
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-140 503.8 467 55.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.4e-140 503.8 468 56.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.9e-140 503.4 468 56.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.2e-140 502.3 468 56.0
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 4.2e-140 502.3 467 57.0
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 5.4e-140 501.9 467 55.9
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-139 500.4 467 56.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.6e-139 498.8 467 55.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.9e-139 498.0 405 59.5
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-138 496.1 467 55.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.1e-137 494.2 466 56.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-137 493.4 469 53.5
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.1e-136 490.0 467 55.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.8e-136 489.6 475 51.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.4e-135 486.5 477 51.8
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-135 486.1 468 53.0
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.9e-135 485.0 467 55.0
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.5e-134 483.8 398 59.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.6e-134 481.5 468 52.4
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-133 480.7 468 52.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.9e-133 479.6 468 52.6
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.9e-133 479.6 467 54.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-133 479.2 468 52.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-133 479.2 468 52.6
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.4e-133 478.4 467 54.4
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.4e-133 478.4 467 54.4
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.1e-132 477.6 469 51.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.1e-132 477.6 467 53.7
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 5.4e-132 475.3 467 54.2
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.2e-131 474.2 466 53.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.2e-131 474.2 483 51.3
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-131 473.8 470 53.2
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-131 472.2 467 54.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 6.0e-131 471.9 477 49.7
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.3e-130 470.7 470 53.0
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-130 469.2 468 53.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.9e-130 469.2 468 53.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 6.7e-130 468.4 481 49.5
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-129 467.2 454 53.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 9.6e-129 464.5 464 52.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.6e-128 463.8 461 50.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.8e-128 463.0 467 49.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.8e-128 462.2 321 70.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.8e-128 462.2 321 70.1
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.4e-127 460.7 461 51.0
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.1e-127 459.5 468 52.4
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 4.0e-127 459.1 468 52.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-123 446.8 473 51.0
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.9e-121 440.3 428 53.0
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 9.6e-121 438.0 427 53.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 3.7e-120 436.0 427 52.9
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.1e-115 420.2 430 51.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.4e-111 406.8 436 47.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.4e-110 402.9 447 46.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-99 367.5 468 46.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.0e-98 363.2 453 43.3
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.3e-97 359.8 467 41.8
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.7e-96 357.5 452 42.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-96 356.7 452 42.0
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-93 345.9 447 40.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-83 313.2 353 49.0
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.7e-83 312.8 337 52.5
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 8.5e-77 292.0 205 72.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-73 281.2 349 41.0
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.9e-64 249.6 213 56.3
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-60 238.4 203 56.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-60 238.0 203 56.2
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.0e-54 216.1 220 52.7
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.3e-53 214.9 163 59.5
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-46 191.4 164 59.1
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.7e-43 179.9 332 35.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-32 143.7 285 38.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 6.4e-32 142.9 137 50.4
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.1e-18 99.0 92 53.3
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.9e-16 90.1 88 51.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.5e-15 86.7 90 51.1
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.9e-13 80.5 107 37.4
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 3.3e-12 77.4 169 33.7
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.5e-08 63.2 67 44.8
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 7.1e-07 59.7 65 52.3
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 7.1e-07 59.7 38 65.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 9.3e-07 59.3 91 34.1


User provided reference genes

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