Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.0e-126 454.5 239 100.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.8e-107 390.6 221 91.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.2e-105 386.0 221 90.0
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.0e-91 338.6 221 78.7
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.0e-90 336.3 221 77.4
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 4.4e-90 335.1 221 79.2
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 4.4e-90 335.1 221 78.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.4e-90 335.1 228 76.3
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 5.7e-90 334.7 221 78.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 7.5e-90 334.3 221 78.3
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 7.5e-90 334.3 221 77.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 6.3e-89 331.3 221 76.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 6.3e-89 331.3 221 76.9
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.1e-88 328.9 221 77.4
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.5e-87 325.5 221 76.5
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 7.7e-87 324.3 221 77.8
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.1e-85 320.5 221 75.6
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.5e-85 320.1 221 75.1
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.9e-85 319.7 221 74.2
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 9.5e-85 317.4 221 73.3
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.1e-84 316.2 221 74.2
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-84 316.2 228 71.1
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 2.1e-84 316.2 228 71.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.6e-84 315.5 221 73.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.6e-84 315.5 221 73.8
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.7e-84 315.1 221 74.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.7e-84 315.1 221 73.3
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 4.7e-84 315.1 221 73.3
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 6.1e-84 314.7 221 74.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.0e-83 313.9 221 71.5
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.4e-83 313.5 229 70.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.0e-83 312.0 229 70.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.0e-83 312.0 221 72.9
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 5.2e-83 311.6 221 73.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 8.9e-83 310.8 221 71.9
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-82 310.5 221 71.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.5e-82 310.1 221 72.9
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-82 309.7 221 72.9
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.0e-82 309.7 221 71.9
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.6e-82 309.3 221 71.9
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.4e-82 308.9 221 71.5
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.2e-81 306.2 221 71.0
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.8e-81 305.8 221 71.9
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.9e-81 305.1 221 71.0
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.3e-81 304.7 221 71.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 8.3e-81 304.3 221 71.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.1e-80 303.9 228 68.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.1e-80 303.9 225 68.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.4e-80 302.8 221 70.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.4e-80 302.8 221 71.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.4e-80 301.6 227 67.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.2e-79 300.4 221 70.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-79 299.7 227 67.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.5e-79 298.9 221 70.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.5e-79 298.5 221 69.7
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 5.9e-79 298.1 229 66.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.8e-79 297.7 228 69.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-78 297.4 228 69.7
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.3e-78 297.0 221 68.8
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-78 297.0 227 67.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.7e-78 296.6 228 70.6
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.7e-78 296.6 225 69.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.8e-78 295.4 225 70.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.0e-78 295.0 227 67.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 6.6e-78 294.7 229 66.8
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 8.6e-78 294.3 227 65.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 8.6e-78 294.3 228 68.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.1e-77 293.9 221 69.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-77 293.9 223 67.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.5e-77 293.5 221 65.6
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.9e-77 293.1 256 62.9
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-77 292.7 227 66.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.3e-77 292.4 221 69.7
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 9.5e-77 290.8 221 68.3
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.2e-76 290.4 228 66.2
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.1e-76 289.7 227 64.8
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.6e-76 288.9 228 65.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 6.1e-76 288.1 222 68.5
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 6.1e-76 288.1 222 68.5
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 8.0e-76 287.7 223 65.9
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.0e-76 287.7 222 68.9
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.0e-75 287.3 221 67.9
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.0e-75 287.3 222 68.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.0e-75 287.3 221 68.3
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.0e-75 287.3 227 63.9
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.4e-75 287.0 226 68.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.4e-75 287.0 221 71.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.4e-75 287.0 271 57.6
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.3e-75 286.2 222 68.5
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.3e-75 286.2 227 65.6
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.0e-75 285.8 222 68.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-75 285.4 221 64.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.0e-75 285.4 225 68.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 5.2e-75 285.0 221 65.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 5.2e-75 285.0 230 66.5
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 8.9e-75 284.3 224 67.0
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-74 283.9 221 64.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 4.4e-74 282.0 227 64.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 3.7e-73 278.9 230 63.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.4e-72 276.9 223 65.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.2e-72 275.8 230 63.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 7.8e-71 271.2 223 62.8
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-70 270.4 221 63.3
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.3e-70 269.6 189 74.1
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 6.6e-70 268.1 223 63.2
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.5e-69 266.2 224 64.7
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.6e-66 256.1 196 67.9
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 8.3e-65 251.1 223 59.2
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.1e-64 248.8 227 57.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.1e-64 248.8 227 57.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 9.2e-64 247.7 228 58.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.2e-63 247.3 228 61.0
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.5e-63 245.7 230 57.0
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.6e-62 241.5 190 66.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.6e-60 235.7 221 57.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-58 229.6 167 71.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.4e-56 223.8 225 57.8
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.9e-56 223.4 221 57.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.2e-56 222.6 223 54.7
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-55 219.9 138 76.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 3.9e-54 215.7 165 65.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 4.3e-53 212.2 221 55.7
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-40 171.0 201 48.3
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-40 169.9 137 62.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 7.8e-39 164.9 224 43.3
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.9e-38 162.5 224 42.9
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.6e-37 157.9 218 46.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.1e-36 156.8 121 63.6
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 9.9e-34 147.9 225 43.6
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.2e-32 142.5 91 81.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 8.7e-30 134.8 196 45.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 3.3e-29 132.9 205 41.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.0e-27 124.8 110 59.1
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.9e-25 119.8 92 68.5
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.9e-23 111.7 89 61.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.4e-19 100.1 94 60.6
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.9e-19 98.6 98 54.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.5e-18 95.9 173 42.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.2e-16 89.7 161 36.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.5e-16 89.0 58 70.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.6e-15 87.4 87 60.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 7.4e-13 78.6 89 53.9
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.1e-11 74.7 96 46.9
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.5e-08 63.5 90 51.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.5e-08 63.5 120 35.8
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.2e-08 62.8 181 29.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.7e-07 60.1 36 77.8
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 2.7e-07 60.1 90 41.1
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 4.6e-07 59.3 34 76.5


User provided reference genes

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