Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.8e-146 521.9 264 100.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 7.9e-141 503.8 272 94.5
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.1e-134 483.4 264 91.7
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.3e-131 471.5 266 91.7
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.4e-131 470.7 264 89.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.6e-130 469.5 267 89.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.1e-130 469.2 266 90.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.8e-130 468.8 267 90.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 3.1e-129 465.3 267 88.8
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 4.5e-128 461.5 265 87.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.9e-127 458.8 265 87.5
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.9e-127 458.8 267 88.4
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.9e-127 458.8 267 87.6
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 5.0e-127 458.0 265 87.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.9e-126 456.1 267 86.5
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 7.2e-126 454.1 267 86.1
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 9.3e-126 453.8 267 87.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 9.3e-126 453.8 266 87.2
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 9.3e-126 453.8 267 86.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.9e-125 450.7 266 86.5
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.9e-125 450.7 268 86.6
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.8e-124 449.5 267 86.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.1e-124 448.0 267 84.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.1e-124 448.0 267 84.6
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.7e-124 447.6 259 87.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-123 446.0 267 83.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.9e-123 446.0 265 86.8
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.3e-122 443.4 267 84.6
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-122 443.4 264 84.8
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.2e-122 442.6 263 85.2
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 4.8e-122 441.4 267 83.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.8e-122 441.4 263 85.9
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.2e-122 440.7 264 84.5
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.1e-121 440.3 266 86.1
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.4e-121 439.9 264 84.5
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.4e-121 439.1 263 84.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 5.3e-121 438.0 267 84.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.2e-120 436.8 267 83.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.5e-120 436.4 266 84.2
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.0e-120 436.0 267 83.9
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.6e-120 435.6 265 83.8
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.4e-120 435.3 262 85.1
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.4e-120 435.3 265 83.4
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-120 434.9 267 83.5
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 5.9e-120 434.5 267 83.1
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 5.9e-120 434.5 267 84.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.0e-119 433.7 264 83.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-119 433.3 267 82.8
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.3e-119 433.3 267 82.8
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.7e-119 433.0 264 83.0
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.2e-119 432.6 259 84.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.2e-119 432.6 264 84.8
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.9e-119 432.2 268 83.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.9e-119 432.2 274 83.6
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.0e-119 431.4 268 84.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.5e-118 429.1 267 82.8
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-118 428.7 254 87.4
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.2e-118 428.3 269 80.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 7.2e-118 427.6 267 82.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.2e-118 427.6 265 82.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 9.4e-118 427.2 260 85.4
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.2e-117 426.8 265 82.6
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.1e-117 426.0 281 80.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.7e-117 425.6 267 83.5
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.6e-117 425.2 267 80.9
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.6e-117 424.9 250 87.2
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 6.1e-117 424.5 266 82.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.9e-117 424.1 270 83.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.4e-116 423.3 255 85.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.8e-116 422.9 265 83.0
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.0e-116 422.2 262 81.7
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 8.8e-116 420.6 262 80.9
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.5e-115 419.9 265 82.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.0e-115 419.5 268 81.3
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.5e-115 419.1 265 81.9
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.3e-115 418.7 293 75.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 7.4e-115 417.5 265 80.8
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.3e-114 416.8 267 81.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.7e-114 416.4 264 80.7
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.7e-114 416.4 262 80.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 4.8e-114 414.8 284 77.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.3e-114 414.5 268 80.6
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-113 413.7 261 81.2
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.4e-113 413.3 266 77.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-112 409.8 262 79.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.9e-112 407.9 264 78.8
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 250 82.8
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 8.5e-111 404.1 254 80.7
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-110 403.7 251 81.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.2e-110 402.1 250 81.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.2e-110 402.1 260 79.6
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 9.4e-110 400.6 308 70.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 9.4e-110 400.6 265 78.1
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-109 400.2 267 77.9
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.6e-109 399.8 238 85.3
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 7.9e-109 397.5 265 77.4
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.3e-108 396.0 259 78.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.0e-108 395.6 248 81.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.1e-108 394.8 259 79.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.1e-107 393.7 280 75.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.5e-107 393.3 318 68.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 7.0e-105 384.4 256 78.9
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.0e-104 382.9 268 75.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-104 382.1 257 77.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.2e-103 379.4 270 73.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.5e-103 377.9 269 74.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-102 377.1 250 79.2
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 7.2e-102 374.4 264 75.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.1e-101 372.9 268 73.1
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.0e-101 370.9 261 74.3
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.3e-100 369.4 275 74.2
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.0e-100 369.0 266 73.3
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.8e-100 367.5 260 71.9
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.8e-100 367.5 225 83.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.6e-99 365.9 261 73.6
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.4e-99 365.2 261 73.6
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 4.4e-99 365.2 257 76.3
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 9.7e-99 364.0 262 72.1
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.7e-98 363.2 264 71.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.2e-98 362.8 262 72.5
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.8e-98 361.7 260 73.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 6.3e-98 361.3 257 72.8
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 6.3e-98 361.3 257 72.8
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 8.2e-98 360.9 261 72.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.4e-97 360.1 262 71.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.8e-97 359.8 261 72.0
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 5.3e-97 358.2 273 70.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 9.1e-97 357.5 258 72.5
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.1e-97 357.5 261 71.6
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-96 357.1 261 71.3
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.7e-96 355.9 260 72.7
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 7.7e-96 354.4 257 72.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.7e-95 353.2 261 72.0
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 8.5e-95 350.9 280 66.8
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.2e-94 348.6 253 73.5
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 9.4e-94 347.4 235 77.4
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.2e-93 347.1 257 72.4
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.8e-92 341.3 261 71.3
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.7e-90 335.5 210 83.8
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.8e-89 333.2 258 68.2
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.0e-87 327.4 199 84.9
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 6.5e-87 324.7 259 64.9
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-86 323.2 263 65.0
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.5e-86 321.6 259 65.3
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.1e-85 319.7 194 83.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.7e-85 318.5 263 64.6
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.4e-83 312.4 240 71.2
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.4e-83 312.0 260 64.2
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 6.3e-82 308.1 259 62.9
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.4e-74 281.6 189 77.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-72 277.3 144 93.8
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.4e-67 258.8 174 77.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.2e-41 172.9 214 49.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.3e-38 162.9 194 46.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-37 161.0 243 43.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.6e-37 160.6 222 45.0
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 2.8e-37 159.8 115 73.0
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.4e-35 152.9 121 70.2
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-31 140.2 74 95.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-30 136.3 93 73.1
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.8e-26 122.9 76 78.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-26 122.1 209 41.1
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.3e-18 97.8 179 39.1
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.2e-18 97.1 124 42.7
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.7e-16 90.1 100 52.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 6.0e-16 89.0 122 48.4
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.2e-13 78.6 40 90.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 8.2e-13 78.6 41 82.9
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.9e-11 72.4 41 78.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 7.6e-11 72.0 43 72.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 4.2e-09 66.2 138 34.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.0e-07 60.1 86 34.9
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 8.7e-07 58.5 32 90.6


User provided reference genes

Program Settings