Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-185 652.1 323 100.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.1e-172 609.0 323 92.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.6e-167 592.8 370 81.9
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.1e-164 582.4 323 89.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 4.0e-147 525.0 321 77.6
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.7e-145 519.6 321 77.3
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.9e-145 518.8 324 78.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 4.9e-145 518.1 322 77.0
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.2e-143 513.5 322 76.7
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-143 513.5 324 77.8
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.2e-143 513.5 322 76.7
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.1e-143 512.7 323 77.4
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.0e-143 511.1 324 75.6
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.0e-142 510.4 324 78.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.0e-142 510.4 332 75.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.0e-142 508.8 325 74.8
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.0e-142 508.8 322 76.1
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.9e-141 506.1 323 75.9
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.6e-141 504.6 321 73.8
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 7.4e-141 504.2 325 73.2
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.3e-140 503.4 324 75.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 6.2e-140 501.1 321 73.8
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.4e-139 500.0 324 75.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.4e-139 500.0 321 72.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.1e-139 498.8 322 73.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.1e-139 498.8 319 75.9
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.0e-139 498.4 321 73.2
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 9.0e-139 497.3 322 73.9
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.2e-138 496.9 324 74.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.5e-138 496.5 318 73.9
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.8e-138 494.6 322 72.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.0e-137 493.8 326 73.9
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-137 493.0 324 73.8
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.8e-137 491.9 323 72.4
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.4e-137 490.7 324 74.4
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.4e-136 490.0 323 74.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.9e-136 489.6 320 73.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.2e-136 488.8 323 72.4
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 4.2e-136 488.4 323 72.8
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 7.1e-136 487.6 322 72.0
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.1e-135 486.1 326 71.8
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.7e-135 485.7 322 71.1
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.7e-135 485.7 326 72.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.7e-135 485.7 326 71.8
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.9e-135 484.2 327 72.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.3e-134 482.6 322 73.3
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.0e-134 482.3 322 70.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 3.3e-133 478.8 322 71.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.3e-133 478.8 321 72.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.3e-133 478.8 322 71.1
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 4.3e-133 478.4 324 71.0
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-133 478.0 322 71.1
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.4e-133 477.6 318 71.1
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.3e-132 476.9 322 69.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.1e-132 476.1 326 71.8
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.8e-132 475.7 326 70.2
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.8e-132 475.7 322 69.6
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.8e-132 474.9 321 71.0
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.3e-132 474.6 322 70.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 8.2e-132 474.2 325 70.5
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.2e-132 474.2 325 70.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 8.2e-132 474.2 319 70.2
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.1e-131 472.2 325 70.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 9.0e-131 470.7 324 71.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-130 470.3 321 70.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.0e-130 469.5 322 71.1
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 3.4e-130 468.8 322 69.3
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.2e-129 466.1 322 68.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.8e-129 465.3 321 71.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.0e-129 464.9 324 69.1
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 8.5e-129 464.2 323 69.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.5e-128 462.6 324 68.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.2e-128 461.8 322 68.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.6e-127 458.4 327 69.7
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.0e-126 455.7 321 69.2
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.1e-126 454.9 323 68.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.9e-125 453.0 306 70.3
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 9.7e-125 450.7 324 69.4
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.6e-124 449.9 326 67.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.2e-124 449.5 329 66.9
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.7e-124 448.7 326 67.5
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 4.8e-124 448.4 326 67.5
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.8e-124 448.4 303 68.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.4e-123 446.0 320 69.1
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.4e-123 446.0 326 67.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.1e-123 445.3 323 66.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.0e-121 440.7 326 65.3
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.7e-121 439.9 326 65.0
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.7e-121 439.9 326 65.0
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.8e-121 438.7 318 68.2
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 5.0e-121 438.3 326 65.3
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 6.5e-121 438.0 323 66.6
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 8.5e-121 437.6 323 64.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 64.4
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.2e-119 433.7 323 66.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.6e-119 433.3 326 65.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 3.6e-119 432.2 327 66.4
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.0e-118 429.1 278 75.5
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.0e-117 426.4 264 78.0
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.2e-116 422.9 303 66.7
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 6.3e-116 421.4 324 63.3
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 8.2e-116 421.0 324 63.6
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.1e-115 420.6 286 69.9
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 9.1e-115 417.5 294 70.7
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.2e-114 417.2 324 63.0
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.4e-114 415.6 325 63.1
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.7e-111 406.0 417 54.7
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 4.7e-111 405.2 323 61.3
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.6e-109 399.4 252 77.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.6e-109 399.4 321 62.6
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.1e-107 392.5 374 55.9
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-106 389.4 323 59.4
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 7.7e-106 387.9 323 59.4
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.2e-105 386.3 541 42.5
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.0e-102 375.6 323 60.1
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.7e-101 370.9 323 58.8
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.3e-100 370.5 685 36.2
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.2e-100 367.9 322 59.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.0e-98 363.2 287 62.4
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 3.4e-93 345.9 266 64.3
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 6.3e-92 341.7 220 72.3
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 9.1e-91 337.8 263 62.0
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 7.2e-88 328.2 231 68.0
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.5e-88 327.8 308 51.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.6e-85 319.7 303 51.8
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.8e-85 317.8 308 49.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.0e-82 310.1 256 59.0
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.5e-80 303.9 202 73.8
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 8.3e-76 288.1 306 48.7
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 8.6e-73 278.1 221 60.2
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 3.3e-72 276.2 177 73.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 5.8e-53 212.2 298 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 9.9e-45 184.9 186 47.3
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 5.1e-33 146.0 96 71.9
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.3e-32 142.9 94 68.1
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-31 141.4 94 68.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.7e-31 139.8 99 65.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.3e-30 136.0 75 78.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.8e-29 132.5 86 77.9
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-27 128.3 99 62.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 5.5e-27 125.9 119 56.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 5.3e-22 109.4 325 26.2
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-20 102.4 88 59.1
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.1e-19 99.0 81 56.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 4.1e-14 83.2 60 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.2e-10 71.6 66 57.6
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 8.8e-09 65.5 49 63.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 8.8e-09 65.5 49 63.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 48 64.6
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.3e-08 63.5 69 46.4
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 4.3e-08 63.2 56 51.8
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.7e-08 62.0 43 67.4


User provided reference genes

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