Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.8e-166 588.6 304 100.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.5e-151 538.9 309 90.6
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.1e-149 533.5 335 85.7
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.9e-146 522.7 344 82.8
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.3e-135 485.3 309 79.6
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.7e-135 483.8 309 79.3
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.8e-133 479.6 310 79.7
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.5e-132 476.5 310 80.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.9e-130 469.5 309 77.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.2e-130 468.4 310 79.7
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 7.2e-130 467.6 309 76.7
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.6e-129 466.5 308 76.3
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.0e-129 464.2 309 77.0
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.0e-128 463.8 309 75.1
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.4e-128 463.4 309 75.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-128 462.6 309 75.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.2e-128 461.5 309 75.1
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.5e-127 459.9 307 76.9
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.6e-127 459.1 309 76.4
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.7e-127 458.0 310 75.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 7.4e-127 457.6 299 78.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.7e-126 456.4 309 76.1
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.8e-126 455.7 309 75.1
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.7e-126 455.3 309 74.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.8e-126 454.9 307 75.6
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 3.1e-125 452.2 302 77.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.6e-124 449.9 309 74.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.0e-124 449.5 309 73.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 4.5e-124 448.4 309 72.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.5e-124 448.4 309 75.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.5e-124 448.4 309 75.1
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 4.5e-124 448.4 307 73.0
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 4.5e-124 448.4 309 72.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.5e-124 448.4 301 75.7
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.0e-123 447.2 300 77.0
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.7e-123 446.4 301 75.1
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.7e-123 446.4 312 73.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.2e-123 446.0 313 75.4
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.8e-123 445.3 309 72.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 6.5e-123 444.5 293 77.1
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 303 75.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-122 443.0 303 75.9
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.9e-122 443.0 303 76.2
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.5e-122 441.4 309 73.8
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.6e-121 439.9 307 73.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.7e-121 439.1 307 71.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 8.0e-121 437.6 299 73.9
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.0e-121 437.6 313 73.8
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.8e-120 436.4 300 73.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 5.2e-120 434.9 300 72.7
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.8e-120 434.5 304 75.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.8e-120 434.5 307 72.0
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 8.8e-120 434.1 308 71.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.2e-119 433.7 284 75.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.5e-119 433.3 310 70.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.0e-119 433.0 305 73.4
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.6e-119 432.6 300 72.3
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.4e-119 432.2 307 71.3
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.4e-119 432.2 303 72.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 4.4e-119 431.8 312 71.5
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 5.7e-119 431.4 312 71.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 5.7e-119 431.4 303 71.6
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 6.3e-118 427.9 315 70.5
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 8.3e-118 427.6 309 71.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 8.3e-118 427.6 309 72.2
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 8.3e-118 427.6 309 70.9
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 8.3e-118 427.6 309 72.2
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.1e-117 427.2 309 72.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.1e-117 427.2 309 71.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-117 426.8 301 72.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.8e-117 426.4 309 71.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.8e-117 426.4 305 73.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.4e-117 426.0 301 72.4
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.1e-117 425.6 309 71.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.1e-117 425.2 313 70.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.1e-117 425.2 310 70.6
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 7.0e-117 424.5 304 72.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.0e-117 424.5 310 69.0
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 7.0e-117 424.5 304 70.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.1e-117 424.1 302 71.5
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 9.1e-117 424.1 297 71.7
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.2e-116 423.7 309 70.6
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.6e-116 423.3 312 70.5
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.0e-116 422.9 311 68.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.0e-116 422.9 314 70.4
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 2.7e-116 422.5 309 70.9
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.7e-116 422.5 298 72.8
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 3.5e-116 422.2 288 74.0
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 3.5e-116 422.2 309 70.9
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.3e-115 420.2 390 60.0
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.3e-115 420.2 302 70.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-115 419.9 298 71.5
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.7e-115 419.9 275 76.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.9e-115 419.1 309 70.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-114 417.2 308 68.2
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.9e-114 416.4 352 62.8
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.2e-114 415.6 299 71.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-114 415.2 304 69.4
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.2e-114 414.5 318 67.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.7e-113 412.5 310 68.7
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.1e-113 411.4 292 69.9
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 6.1e-113 411.4 296 69.3
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 6.1e-113 411.4 291 70.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.4e-112 410.2 347 63.1
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.8e-112 409.8 302 67.2
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.2e-112 408.3 301 69.1
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 5.2e-112 408.3 313 66.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-111 406.8 310 68.7
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.0e-111 406.4 296 67.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.4e-111 405.6 298 69.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-109 400.6 315 67.0
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.8e-109 399.8 302 68.2
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.1e-109 397.5 257 75.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.2e-108 397.1 274 74.8
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.2e-108 397.1 266 72.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.7e-108 396.0 308 64.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.9e-108 394.8 259 76.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.3e-107 393.7 275 70.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.3e-107 392.9 306 68.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.5e-106 390.2 302 66.6
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 9.8e-103 377.5 305 63.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.1e-101 374.0 298 63.4
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 2.0e-100 369.8 305 59.7
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.7e-100 369.4 305 63.3
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.7e-99 366.7 229 79.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-99 366.3 300 63.7
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.9e-99 365.9 292 64.4
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.6e-98 361.7 276 65.2
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.9e-93 346.7 276 62.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-85 320.1 230 71.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 6.6e-83 311.6 271 62.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 5.6e-82 308.5 293 51.2
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.7e-81 305.4 285 52.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.3e-80 303.1 305 53.8
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.0e-79 300.1 298 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.2e-78 296.6 276 54.0
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.4e-78 295.0 281 53.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.4e-77 293.9 291 51.9
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 6.0e-76 288.5 277 57.0
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.3e-75 287.3 275 52.0
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.0e-75 286.2 275 51.6
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.2e-73 278.5 296 54.7
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.9e-72 274.6 199 69.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 8.9e-72 274.6 247 57.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.6e-66 255.4 238 54.6
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-65 253.4 326 49.4
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.1e-64 251.1 193 67.9
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.9e-62 242.3 209 61.7
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.3e-59 233.4 181 64.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.5e-58 229.9 148 74.3
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 9.9e-55 218.0 210 51.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 6.4e-54 215.3 221 49.8
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 5.4e-53 212.2 183 60.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.1e-50 204.5 149 69.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.3e-49 201.1 275 40.4
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.1e-41 173.7 152 59.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.3e-35 154.5 275 31.6
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.2e-30 137.1 318 28.9
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.3e-27 127.1 108 62.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 6.7e-27 125.6 209 32.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 8.2e-25 118.6 288 29.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.9e-22 110.2 112 49.1
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.8e-22 109.8 76 71.1
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 6.5e-22 109.0 128 50.0
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 3.0e-19 100.1 270 30.4
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.8e-11 74.3 184 35.9
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 2.2e-09 67.4 45 71.1
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 4.1e-08 63.2 56 51.8


User provided reference genes

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