Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.2e-244 848.6 439 100.0
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 4.2e-232 807.7 443 95.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.5e-226 787.7 439 92.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.0e-214 750.0 488 82.4
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.6e-207 726.1 435 85.5
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.7e-204 716.1 435 82.8
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.9e-203 712.6 437 83.3
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.1e-200 703.4 437 81.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.9e-200 702.6 436 82.1
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.9e-200 702.6 438 83.6
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.9e-200 702.6 435 81.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.3e-200 701.8 433 83.6
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 7.3e-200 700.7 431 83.3
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 7.3e-200 700.7 424 84.0
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.6e-199 699.5 434 82.3
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.6e-199 699.5 431 83.3
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.6e-199 699.5 424 83.7
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.6e-199 699.5 440 81.6
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.1e-199 699.1 432 82.6
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.8e-199 698.7 424 83.7
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.8e-199 698.7 433 81.8
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 3.6e-199 698.4 424 83.7
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 4.7e-199 698.0 425 83.8
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 4.7e-199 698.0 424 83.3
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 4.7e-199 698.0 424 83.3
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 4.7e-199 698.0 424 83.3
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 6.2e-199 697.6 424 83.7
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-198 696.4 424 83.5
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-198 696.4 435 81.4
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-198 696.4 435 81.4
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.8e-198 696.0 433 81.5
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.3e-198 695.7 425 83.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.0e-198 694.9 424 83.5
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 5.2e-198 694.5 424 83.7
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 5.2e-198 694.5 424 83.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.2e-197 693.3 438 81.5
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.2e-197 693.3 438 81.5
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.5e-197 693.0 434 81.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-197 692.6 435 80.9
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.4e-197 691.4 437 80.3
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.9e-196 688.7 424 82.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 2.9e-196 688.7 435 82.8
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.9e-196 688.7 430 82.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 6.4e-196 687.6 442 79.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.4e-195 686.4 441 80.0
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.4e-195 685.6 424 82.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.1e-195 684.1 426 82.2
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 7.1e-195 684.1 426 82.2
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 7.1e-195 684.1 437 81.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.6e-194 682.9 424 81.1
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 7.8e-194 680.6 440 79.5
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.0e-193 680.2 434 80.2
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.3e-193 679.9 426 81.7
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.7e-193 679.5 434 82.5
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 3.9e-193 678.3 426 81.5
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.9e-193 678.3 437 80.3
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 5.1e-193 677.9 441 79.4
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 6.6e-193 677.6 448 80.1
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.6e-193 677.2 428 81.8
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 8.6e-193 677.2 437 79.2
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-192 676.8 428 81.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.5e-192 675.6 439 79.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 3.3e-192 675.2 440 78.6
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.3e-192 675.2 441 78.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.6e-192 674.5 398 84.2
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 9.5e-192 673.7 427 81.5
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.2e-191 673.3 428 81.5
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.6e-191 672.9 440 78.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.6e-191 672.9 445 79.6
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.1e-191 672.5 440 78.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.1e-191 672.5 428 81.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.6e-191 671.8 431 80.3
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 3.6e-191 671.8 430 80.7
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 6.2e-191 671.0 429 78.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 6.2e-191 671.0 438 77.6
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 6.2e-191 671.0 420 81.4
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.1e-190 670.2 420 81.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.2e-189 666.8 434 79.5
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.4e-189 665.2 401 82.5
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 5.8e-189 664.5 437 77.3
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 7.6e-189 664.1 453 75.5
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 9.9e-189 663.7 425 79.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 9.9e-189 663.7 437 77.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 9.9e-189 663.7 434 77.9
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.7e-188 662.9 433 76.0
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.7e-188 662.9 439 76.8
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.2e-188 662.5 426 79.6
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.2e-188 662.5 432 78.7
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 2.2e-188 662.5 441 77.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.9e-188 662.1 433 77.8
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 3.8e-188 661.8 416 80.5
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.9e-188 661.4 439 77.7
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 8.4e-188 660.6 416 80.3
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.4e-188 660.6 440 78.4
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-187 660.2 434 77.0
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.1e-187 660.2 441 77.3
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.9e-187 659.4 440 78.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.4e-187 659.1 433 77.8
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 3.2e-187 658.7 427 78.5
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 5.4e-187 657.9 433 78.3
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 9.2e-187 657.1 434 77.9
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.6e-186 656.4 426 77.7
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.0e-185 653.7 427 78.9
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.7e-185 652.9 436 76.8
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.3e-185 652.5 433 76.2
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.5e-184 649.8 469 73.6
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.9e-184 649.4 428 77.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-184 649.0 467 74.5
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.3e-184 648.7 426 78.9
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 5.6e-184 647.9 436 76.8
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.2e-183 646.7 427 79.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 1.4e-182 643.3 519 66.9
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.0e-182 641.7 428 79.0
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 5.3e-182 641.3 439 76.1
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.6e-181 639.0 435 75.9
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.3e-180 636.7 555 62.5
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.2e-179 631.7 432 76.9
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.2e-178 630.2 418 76.3
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 4.6e-178 628.2 426 76.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.5e-176 623.2 387 80.4
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 6.9e-174 614.4 411 75.9
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 6.9e-174 614.4 425 75.3
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 6.9e-174 614.4 450 72.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.0e-173 612.8 385 79.2
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.4e-172 607.8 426 74.9
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.2e-170 603.6 394 74.6
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 5.1e-169 598.2 423 74.5
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-168 596.7 350 84.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.3e-167 593.6 426 73.2
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.1e-167 592.8 402 74.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 8.1e-167 590.9 414 73.4
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 8.4e-164 580.9 383 73.4
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.6e-162 576.6 361 82.3
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.6e-162 576.6 424 70.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.3e-161 572.8 343 84.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.0e-156 557.4 361 79.5
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 3.3e-152 542.3 340 80.3
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.3e-152 542.0 349 79.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.4e-150 537.0 345 80.0
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 2.9e-148 529.3 389 68.4
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.8e-145 520.0 405 67.7
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.3e-144 515.4 330 76.7
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.4e-142 510.4 370 70.3
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.6e-141 506.1 435 63.4
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.3e-140 503.8 404 65.8
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 7.2e-139 498.0 348 73.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.8e-137 493.4 366 69.9
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 9.4e-131 471.1 261 88.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 4.0e-121 439.1 329 66.9
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.2e-117 427.6 268 80.6
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 3.5e-117 426.0 303 73.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.2e-112 411.0 387 58.1
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.6e-104 383.3 234 82.9
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-91 340.9 239 72.8
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 7.8e-85 318.5 187 86.1
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.6e-84 315.5 191 82.7
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.2e-82 311.2 230 71.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-79 301.2 368 45.7
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 3.7e-79 299.7 352 50.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.3e-68 264.6 154 83.1
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.1e-62 245.0 146 82.9
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 5.4e-62 242.7 220 65.5
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.9e-61 238.8 192 63.0
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.9e-61 238.8 192 63.0
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-56 224.2 245 56.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.8e-41 174.5 99 88.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 3.8e-39 166.8 140 65.7
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.3e-34 151.8 220 48.6
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-26 124.8 294 37.1
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.7e-26 124.8 82 78.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.2e-22 110.5 72 80.6
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 1.6e-21 108.2 89 67.4
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 3.3e-19 100.5 59 86.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 3.3e-19 100.5 59 86.4
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.8e-18 97.4 90 57.8
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 9.1e-17 92.4 79 64.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 5.9e-16 89.7 50 86.0
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.5e-14 85.1 47 89.4
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.0e-12 79.0 45 80.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 2.8e-10 70.9 74 54.1
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.1e-09 68.9 74 54.1
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 9.1e-09 65.9 74 52.7
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.0e-07 62.4 43 69.8
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.0e-07 62.4 43 72.1
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.5e-06 56.6 28 75.0
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 7.2e-06 56.2 43 60.5


User provided reference genes

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