Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G040400 Populus trichocarpa HOM05D003587 ORTHO05D004139 3.3e-43 177.9 88 100.0
Sabra10G0171700 Salix brachista HOM05D003587 ORTHO05D004139 5.1e-36 154.1 87 88.5
Potri.010G221900 Populus trichocarpa HOM05D003587 ORTHO05D004139 4.8e-34 147.5 87 83.9
Dinv11778 Davidia involucrata HOM05D003587 ORTHO05D004139 9.0e-33 143.3 87 80.5
Actinidia38276 Actinidia chinensis HOM05D003587 ORTHO05D004139 2.0e-32 142.1 87 79.3
Thecc.10G072900 Theobroma cacao HOM05D003587 ORTHO05D004139 2.0e-32 142.1 87 79.3
Hma1.2p1_1004F.1_g246830 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 4.5e-32 141.0 87 80.5
Gorai.013G025600 Gossypium raimondii HOM05D003587 ORTHO05D004139 4.9e-31 137.5 87 75.9
Gohir.A13G024000 Gossypium hirsutum HOM05D003587 ORTHO05D004139 6.4e-31 137.1 87 77.0
TWI15G0175 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 6.4e-31 137.1 87 75.9
Oeu027482.2 Olea europaea HOM05D003587 ORTHO05D004139 8.4e-31 136.7 87 75.9
TAR633G2007 Trochodendron aralioides HOM05D003587 ORTHO05D004139 1.1e-30 136.3 87 75.9
CSS0029358 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 1.4e-30 136.0 87 73.6
Ciclev10031308m.g Citrus clementina HOM05D003587 ORTHO05D004139 1.4e-30 136.0 87 75.9
Gohir.D13G022900 Gossypium hirsutum HOM05D003587 ORTHO05D004139 1.4e-30 136.0 87 75.9
GSVIVG01016284001 Vitis vinifera HOM05D003587 ORTHO05D004139 1.4e-30 136.0 87 73.6
Cc09_g02070 Coffea canephora HOM05D003587 ORTHO05D004139 1.9e-30 135.6 87 74.7
Prupe.2G214200 Prunus persica HOM05D003587 ORTHO05D004139 2.5e-30 135.2 87 75.9
vmacro07076 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 2.5e-30 135.2 87 74.7
Cfa021506 Carpinus fangiana HOM05D003587 ORTHO05D004139 3.2e-30 134.8 87 73.6
Haze_16897 Corylus avellana HOM05D003587 ORTHO05D004139 4.2e-30 134.4 87 73.6
FAN10G2586 Fragaria x ananassa HOM05D003587 ORTHO05D004139 4.2e-30 134.4 87 74.7
FAN10G4213 Fragaria x ananassa HOM05D003587 ORTHO05D004139 4.2e-30 134.4 87 74.7
Atru.BG.272.p Acer truncatum HOM05D003587 ORTHO05D004139 7.1e-30 133.7 87 74.7
Atru.chr12.764 Acer truncatum HOM05D003587 ORTHO05D004139 7.1e-30 133.7 87 74.7
FAN01G2474 Fragaria x ananassa HOM05D003587 ORTHO05D004139 7.1e-30 133.7 87 74.7
QL08p056026 Quercus lobata HOM05D003587 ORTHO05D004139 7.1e-30 133.7 87 73.6
FvH4_7g19650 Fragaria vesca HOM05D003587 ORTHO05D004139 9.3e-30 133.3 87 74.7
FAN06G4872 Fragaria x ananassa HOM05D003587 ORTHO05D004139 1.2e-29 132.9 87 73.6
Solyc04g049340.3 Solanum lycopersicum HOM05D003587 ORTHO05D004139 1.2e-29 132.9 83 75.9
RcHm_v2.0_Chr1g0363461 Rosa chinensis HOM05D003587 ORTHO05D004139 1.6e-29 132.5 87 72.4
MSTRG.8154 Avicennia marina HOM05D003587 ORTHO05D004139 2.7e-29 131.7 88 73.9
Sopen04g019250 Solanum pennellii HOM05D003587 ORTHO05D004139 2.7e-29 131.7 83 74.7
Lsat_1_v5_gn_2_114281 Lactuca sativa HOM05D003587 ORTHO05D004139 4.6e-29 131.0 87 71.3
ClCG08G007470 Citrullus lanatus HOM05D003587 ORTHO05D004139 6.0e-29 130.6 87 73.6
Nitab4.5_0010934g0010 Nicotiana tabacum HOM05D003587 ORTHO05D004139 6.0e-29 130.6 87 71.3
CiPaw.01G273300 Carya illinoinensis HOM05D003587 ORTHO05D004139 7.9e-29 130.2 87 71.3
MD07G1175000 Malus domestica HOM05D003587 ORTHO05D004139 7.9e-29 130.2 87 71.3
Manes.10G045400 Manihot esculenta HOM05D003587 ORTHO05D004139 7.9e-29 130.2 87 72.4
CsaV3_6G036380 Cucumis sativus L. HOM05D003587 ORTHO05D004139 1.0e-28 129.8 87 73.6
Peaxi162Scf00809g00432 Petunia axillaris HOM05D003587 ORTHO05D004139 1.8e-28 129.0 87 71.3
DCAR_019108 Daucus carota HOM05D003587 ORTHO05D007145 2.3e-28 128.6 87 69.0
MELO3C019793.2 Cucumis melo HOM05D003587 ORTHO05D004139 3.9e-28 127.9 87 71.3
ECA238G1416 Erigeron canadensis HOM05D003587 ORTHO05D004139 3.9e-28 127.9 87 67.8
HanXRQChr01g0011501 Helianthus annuus HOM05D003587 ORTHO05D004139 3.9e-28 127.9 87 67.8
Lj5g0014900 Lotus japonicus HOM05D003587 ORTHO05D004139 3.9e-28 127.9 87 67.8
arahy.Tifrunner.gnm1.ann1.TJZR4S Arachis hypogaea HOM05D003587 ORTHO05D004139 5.1e-28 127.5 87 69.0
Lalb_Chr19g0129681 Lupinus albus HOM05D003587 ORTHO05D004139 8.7e-28 126.7 87 67.8
Rhsim03G0120900 Rhododendron simsii HOM05D003587 ORTHO05D004139 8.7e-28 126.7 88 72.7
SalBow3G0063 Salvia bowleyana HOM05D003587 ORTHO05D004139 8.7e-28 126.7 87 73.6
Nitab4.5_0000575g0260 Nicotiana tabacum HOM05D003587 ORTHO05D004139 1.1e-27 126.3 87 70.1
arahy.Tifrunner.gnm1.ann1.3IGY6I Arachis hypogaea HOM05D003587 ORTHO05D004139 1.5e-27 125.9 87 67.8
Migut.F01778 Erythranthe guttata HOM05D003587 ORTHO05D004139 1.5e-27 125.9 89 69.7
Eucgr.G02826 Eucalyptus grandis HOM05D003587 ORTHO05D004139 1.5e-27 125.9 87 67.8
CAN.G1099.11 Capsicum annuum HOM05D003587 ORTHO05D004139 2.5e-27 125.2 84 73.8
Sed0006152 Sechium edule HOM05D003587 ORTHO05D004139 8.2e-26 120.2 87 67.8
Glyma.16G154700 Glycine max HOM05D003587 ORTHO05D004139 4.0e-25 117.9 87 58.6
PSO384G5085 Papaver somniferum HOM05D003587 ORTHO05D004139 4.0e-25 117.9 83 62.7
Phvul.004G082300 Phaseolus vulgaris HOM05D003587 ORTHO05D004139 4.0e-25 117.9 87 57.5
PSO339G3050 Papaver somniferum HOM05D003587 ORTHO05D004139 6.9e-25 117.1 83 63.9
Nn2g10780 Nelumbo nucifera HOM05D003587 ORTHO05D004139 9.0e-25 116.7 87 64.4
PGR142G0620 Punica granatum HOM05D003587 ORTHO05D004139 9.0e-25 116.7 88 62.5
VMungo0464G0799 Vigna mungo HOM05D003587 ORTHO05D004139 3.4e-24 114.8 87 56.3
Aqoxy3G02282_Aqoxy3G02283 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 2.9e-23 111.7 87 59.8
Lj1A914G42 Lonicera japonica HOM05D003587 ORTHO05D004139 3.5e-21 104.8 87 62.1
ATR0115G029 Amborella trichopoda HOM05D003587 ORTHO05D004139 1.9e-19 99.0 80 60.0
CDE05G3302 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 1.6e-18 95.9 88 54.5
SEGI_26742 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 6.3e-18 94.0 76 57.9
SEGI_29926 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 6.3e-18 94.0 76 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3870 Anthoceros agrestis HOM05D003587 ORTHO05D004139 5.3e-17 90.9 79 55.7
Pp3c8_8340 Physcomitrium patens HOM05D003587 ORTHO05D004139 1.4e-14 82.8 80 50.0
EL10Ac4g10057 Beta vulgaris HOM05D003587 ORTHO05D004139 5.7e-11 70.9 74 41.9
AUR62000241 Chenopodium quinoa HOM05D003587 ORTHO05D004139 1.3e-10 69.7 77 41.6
AUR62006588 Chenopodium quinoa HOM05D003587 ORTHO05D004139 1.3e-10 69.7 77 41.6
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 6.3e-10 67.4 91 36.3
COL.COLO4_23687 Corchorus olitorius HOM05D003587 ORTHO05D004139 8.2e-10 67.0 44 72.7
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 6.9e-09 63.9 77 36.4
Hund07482 Selenicereus undatus HOM05D003587 ORTHO05D004139 9.1e-09 63.5 77 37.7
GSVIVG01037380001 Vitis vinifera HOM05D003587 ORTHO05D004139 9.1e-09 63.5 77 37.7
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 1.2e-08 63.2 77 37.7
Cpa.g.sc34.194 Carica papaya HOM05D003587 ORTHO05D004139 1.5e-08 62.8 91 39.6
Cfa010158 Carpinus fangiana HOM05D003587 ORTHO05D004139 2.6e-08 62.0 93 35.5
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 2.6e-08 62.0 72 37.5
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 2.6e-08 62.0 66 39.4
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 3.4e-08 61.6 77 36.4
ClCG03G014310 Citrullus lanatus HOM05D003587 ORTHO05D004139 3.4e-08 61.6 93 35.5
Ciclev10018028m.g Citrus clementina HOM05D003587 ORTHO05D004139 3.4e-08 61.6 84 34.5
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 4.5e-08 61.2 93 36.6
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 4.5e-08 61.2 93 37.6
TPR.G16429 Trifolium pratense HOM05D003587 ORTHO05D004139 4.5e-08 61.2 73 35.6
Aqoxy1G00052 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 5.9e-08 60.8 77 36.4
CsaV3_1G041910 Cucumis sativus L. HOM05D003587 ORTHO05D004139 5.9e-08 60.8 93 34.4
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 5.9e-08 60.8 84 39.3
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 5.9e-08 60.8 92 38.0
unitig_0.g312 Utricularia gibba HOM05D003587 ORTHO05D004139 5.9e-08 60.8 67 38.8
Manes.02G134100 Manihot esculenta HOM05D003587 ORTHO05D004139 7.7e-08 60.5 76 36.8
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 37.7
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 37.7
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 37.7
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 1.0e-07 60.1 93 35.5
ECA233G3436 Erigeron canadensis HOM05D003587 ORTHO05D000001 1.0e-07 60.1 74 37.8
Nitab4.5_0002161g0020 Nicotiana tabacum HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 33.8
Peaxi162Scf00234g00315 Petunia axillaris HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 33.8
Sed0023945 Sechium edule HOM05D003587 ORTHO05D004139 1.0e-07 60.1 93 35.5
TAR623G1513 Trochodendron aralioides HOM05D003587 ORTHO05D004139 1.0e-07 60.1 77 36.4
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.3e-07 59.7 77 37.7
BNapus_Darmor_BZH_scaffold_38p02370 Brassica napus HOM05D003587 ORTHO05D004139 1.3e-07 59.7 77 37.7
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.3e-07 59.7 77 37.7
Lalb_Chr10g0106041 Lupinus albus HOM05D003587 ORTHO05D004139 1.3e-07 59.7 73 32.9
MD03G1163300 Malus domestica HOM05D003587 ORTHO05D004139 1.3e-07 59.7 61 39.3
Prupe.4G269300 Prunus persica HOM05D003587 ORTHO05D004139 1.3e-07 59.7 61 39.3
ATR0782G174 Amborella trichopoda HOM05D003587 ORTHO05D004139 1.7e-07 59.3 75 38.7
Migut.D00702 Erythranthe guttata HOM05D003587 ORTHO05D004139 1.7e-07 59.3 58 39.7
CiPaw.13G146000 Carya illinoinensis HOM05D003587 ORTHO05D004139 2.2e-07 58.9 77 33.8
Eucgr.B03764 Eucalyptus grandis HOM05D003587 ORTHO05D004139 2.2e-07 58.9 74 40.5
Nitab4.5_0002567g0150 Nicotiana tabacum HOM05D003587 ORTHO05D004139 2.2e-07 58.9 77 33.8
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 2.2e-07 58.9 93 35.5
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 2.9e-07 58.5 78 35.9
Gohir.D09G106200 Gossypium hirsutum HOM05D003587 ORTHO05D004139 2.9e-07 58.5 93 33.3
Gorai.006G123700 Gossypium raimondii HOM05D003587 ORTHO05D004139 2.9e-07 58.5 93 33.3
SEGI_40232 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 2.9e-07 58.5 84 36.9
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 2.9e-07 58.5 77 33.8
Ca_06175_v3 Cicer arietinum L. HOM05D003587 ORTHO05D004139 3.8e-07 58.2 73 34.2
Solyc11g072170.2 Solanum lycopersicum HOM05D003587 ORTHO05D004139 3.8e-07 58.2 76 34.2
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 5.0e-07 57.8 76 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 6.5e-07 57.4 74 35.1
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 6.5e-07 57.4 61 41.0
Gohir.A09G109701 Gossypium hirsutum HOM05D003587 ORTHO05D004139 6.5e-07 57.4 93 32.3
Psat0s2703g0240 Pisum sativum HOM05D003587 ORTHO05D004139 6.5e-07 57.4 73 32.9
Actinidia07008 Actinidia chinensis HOM05D003587 ORTHO05D004139 8.5e-07 57.0 61 39.3
Medtr5g088730 Medicago truncatula HOM05D003587 ORTHO05D004139 8.5e-07 57.0 73 32.9
CDE02G1319 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 1.1e-06 56.6 73 32.9
Lsat_1_v5_gn_5_64961 Lactuca sativa HOM05D003587 ORTHO05D004139 1.1e-06 56.6 58 37.9
Rhsim13G0203000 Rhododendron simsii HOM05D003587 ORTHO05D004139 1.1e-06 56.6 61 37.7
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 1.1e-06 56.6 77 35.1
Zm00001eb329970 Zea mays HOM05D003587 ORTHO05D004139 1.1e-06 56.6 83 37.3
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 1.4e-06 56.2 61 39.3
Dinv35888 Davidia involucrata HOM05D003587 ORTHO05D004139 1.4e-06 56.2 61 37.7
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 1.4e-06 56.2 61 37.7
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 1.4e-06 56.2 61 37.7
Cc01_g07130 Coffea canephora HOM05D003587 ORTHO05D004139 1.9e-06 55.8 61 36.1
CAN.G1085.3 Capsicum annuum HOM05D003587 ORTHO05D004139 2.5e-06 55.5 77 32.5
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 3.2e-06 55.1 65 36.9
Lj2A826G18 Lonicera japonica HOM05D003587 ORTHO05D004139 3.2e-06 55.1 74 32.4
Potri.001G224950 Populus trichocarpa HOM05D003587 ORTHO05D004139 4.2e-06 54.7 76 32.9
CARHR193400 Cardamine hirsuta HOM05D003587 ORTHO05D004139 5.5e-06 54.3 61 37.7
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 5.5e-06 54.3 83 34.9
MSTRG.21324 Avicennia marina HOM05D003587 ORTHO05D004139 7.2e-06 53.9 58 39.7
CSS0013509 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 7.2e-06 53.9 56 39.3
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 7.2e-06 53.9 73 30.1
Sabra16G0133600 Salix brachista HOM05D003587 ORTHO05D004139 7.2e-06 53.9 71 35.2
PSO357G0695 Papaver somniferum HOM05D003587 ORTHO05D004139 9.4e-06 53.5 61 37.7
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 9.4e-06 53.5 61 36.1


User provided reference genes

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