Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.4e-171 606.3 331 100.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 3.3e-128 462.2 291 82.1
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 2.1e-127 459.5 289 81.0
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 8.1e-127 457.6 285 79.3
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 5.8e-125 451.4 229 95.2
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 6.6e-121 438.0 286 78.3
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 9.6e-120 434.1 296 75.7
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 9.6e-120 434.1 289 74.0
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 3.6e-119 432.2 292 74.3
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 1.1e-118 430.6 289 74.4
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 1.4e-118 430.3 293 75.1
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 2.4e-118 429.5 296 74.0
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 3.1e-118 429.1 292 74.3
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.0e-118 427.6 286 74.5
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.2e-117 427.2 292 73.6
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.5e-117 426.8 285 73.7
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 2.0e-117 426.4 290 72.8
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 2.0e-117 426.4 284 73.6
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 7.6e-117 424.5 229 86.5
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 9.9e-117 424.1 288 72.9
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 9.9e-117 424.1 288 72.9
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.9e-116 422.5 285 73.3
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.9e-116 422.5 289 73.0
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.9e-116 422.5 304 69.7
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 4.9e-116 421.8 289 74.4
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 4.9e-116 421.8 292 71.9
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 6.4e-116 421.4 285 73.0
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 6.4e-116 421.4 286 73.1
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 6.4e-116 421.4 288 72.2
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.9e-115 419.9 286 73.4
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.4e-115 419.5 283 74.2
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.6e-114 416.8 287 76.0
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.6e-114 416.8 290 74.1
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.6e-114 416.8 285 71.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 6.0e-114 414.8 283 72.8
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 1.0e-113 414.1 285 73.0
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.0e-113 414.1 282 71.6
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.0e-113 412.5 284 73.2
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.9e-113 412.1 287 73.9
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 1.5e-112 410.2 282 71.6
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 2.5e-112 409.5 283 71.7
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.3e-112 408.7 226 85.4
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 9.6e-112 407.5 223 84.8
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 9.6e-112 407.5 291 71.1
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.3e-111 407.1 290 69.0
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 8.1e-111 404.4 224 85.3
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 2.4e-110 402.9 242 78.9
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 5.3e-110 401.7 242 78.9
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 6.9e-110 401.4 242 78.1
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 1.5e-109 400.2 283 69.6
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.0e-109 399.8 240 80.8
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 3.4e-109 399.1 226 84.5
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 3.8e-108 395.6 278 71.6
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.8e-108 395.6 282 69.1
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 4.9e-108 395.2 282 69.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.1e-107 394.0 293 69.3
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.1e-107 394.0 281 70.1
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 1.9e-107 393.3 229 79.9
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.9e-107 393.3 293 68.9
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.9e-107 393.3 223 82.1
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 7.1e-107 391.3 243 77.8
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 9.3e-107 391.0 231 79.7
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 1.2e-106 390.6 287 69.0
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.1e-106 389.8 294 67.0
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 2.7e-106 389.4 244 76.6
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 3.5e-106 389.0 282 66.7
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 6.0e-106 388.3 232 77.6
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.0e-105 387.5 283 69.6
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 3.0e-105 386.0 225 80.4
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 3.0e-105 386.0 286 69.2
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 3.9e-105 385.6 291 67.0
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.9e-105 385.6 250 74.0
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 6.7e-105 384.8 225 80.0
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.1e-104 384.0 281 69.8
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 3.3e-104 382.5 293 67.6
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 1.6e-103 380.2 232 78.4
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.7e-103 379.0 298 65.1
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.1e-102 377.5 292 65.1
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.4e-102 377.1 234 76.5
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.4e-102 376.3 282 63.8
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 3.1e-102 375.9 287 67.2
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 6.9e-102 374.8 282 64.2
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 1.2e-101 374.0 223 78.5
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 1.2e-101 374.0 223 78.5
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.0e-100 370.9 237 73.0
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.3e-100 370.5 230 75.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.3e-100 370.5 254 72.4
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 8.4e-100 367.9 286 64.7
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 3.2e-99 365.9 227 76.7
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.3e-97 360.5 248 70.6
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 2.3e-97 359.8 294 63.9
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 5.1e-97 358.6 285 63.9
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-96 357.1 290 63.8
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 3.3e-96 355.9 309 60.2
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 3.3e-96 355.9 224 77.7
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 4.2e-91 339.0 295 60.3
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 7.2e-91 338.2 250 66.4
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.0e-89 334.3 233 68.7
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.1e-86 324.3 225 65.3
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.4e-86 323.9 239 66.9
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 5.3e-86 322.0 178 85.4
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.5e-85 320.5 221 67.0
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 5.9e-85 318.5 230 67.8
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.0e-84 317.8 281 57.3
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.3e-84 317.4 232 66.4
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.7e-84 317.0 169 87.6
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 2.2e-84 316.6 283 58.3
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 6.5e-84 315.1 283 58.0
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.9e-83 313.5 225 66.2
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 3.2e-83 312.8 238 69.7
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 3.6e-82 309.3 179 83.8
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 3.0e-81 306.2 242 58.3
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.5e-75 286.6 167 83.8
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 2.1e-74 283.5 220 63.6
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 5.2e-73 278.9 215 60.9
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.4e-70 270.8 167 74.3
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 9.1e-70 268.1 167 76.0
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.5e-60 235.3 176 64.8
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 7.2e-59 231.9 146 74.7
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.2e-58 231.1 198 63.1
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 7.5e-56 221.9 131 79.4
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 7.3e-51 205.3 141 68.8
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.0e-49 201.4 248 44.4
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.6e-48 196.8 147 63.9
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 5.4e-46 189.1 170 60.0
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 7.0e-46 188.7 200 55.0
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 1.0e-44 184.9 209 47.8
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 8.6e-44 181.8 133 64.7
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 8.9e-33 145.2 91 73.6
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 2.4e-30 137.1 131 55.7
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.1e-26 124.0 90 65.6
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.9e-23 113.6 147 49.0
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-20 105.1 127 46.5
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.6e-20 102.4 80 62.5
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 6.0e-13 79.3 41 78.0
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 1.3e-12 78.2 119 35.3
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 3.3e-11 73.6 77 50.6
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 5.3e-09 66.2 87 36.8
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.9e-09 65.9 54 61.1
PRCOL_00000981 Prasinoderma coloniale HOM05D006270 ORTHO05D007755 5.4e-06 56.2 65 43.1


User provided reference genes

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