Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 1.0e-108 396.7 200 100.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.9e-99 365.9 200 90.5
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 4.5e-72 275.0 202 71.3
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.3e-63 246.9 187 69.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 3.2e-62 242.3 191 66.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 5.5e-62 241.5 192 65.1
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 1.2e-61 240.4 188 66.5
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.0e-60 237.3 166 71.1
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 7.5e-59 231.1 166 69.3
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 4.8e-58 228.4 197 61.4
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.8e-58 228.4 192 66.7
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.8e-57 226.5 198 60.1
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.7e-55 219.9 192 65.1
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.7e-55 219.9 187 64.7
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.2e-55 219.5 196 59.2
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 6.5e-55 218.0 185 65.9
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.2e-54 215.3 186 66.1
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 5.5e-54 214.9 189 58.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.6e-53 212.2 169 62.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 3.6e-53 212.2 161 69.6
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.4e-52 210.3 195 59.5
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.8e-52 209.9 159 69.8
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 3.0e-52 209.1 186 60.8
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 3.0e-52 209.1 192 59.9
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 6.8e-52 208.0 195 61.0
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 1.2e-51 207.2 191 60.2
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 2.6e-51 206.1 166 64.5
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 2.6e-51 206.1 188 61.2
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 3.4e-51 205.7 185 62.7
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 9.8e-51 204.1 166 65.1
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 3.1e-49 199.1 198 55.6
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 4.1e-49 198.7 193 59.1
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 4.1e-49 198.7 190 61.1
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 7.0e-49 198.0 190 54.7
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 7.0e-49 198.0 167 61.1
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 2.7e-48 196.1 186 55.9
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 4.5e-48 195.3 186 60.8
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 4.5e-48 195.3 189 59.3
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 5.9e-48 194.9 193 54.4
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.7e-47 193.4 186 58.6
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.7e-47 193.4 174 60.3
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.9e-47 192.6 187 60.4
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 2.9e-47 192.6 158 60.8
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 8.6e-47 191.0 166 59.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-45 187.2 151 65.6
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 3.6e-45 185.7 167 58.1
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.4e-44 183.7 187 55.1
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.4e-44 183.7 187 55.1
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.4e-44 183.7 187 55.1
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.8e-44 183.3 167 59.9
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.8e-44 183.3 145 64.1
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.8e-44 183.3 164 60.4
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 8.9e-44 181.0 188 53.2
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.5e-43 180.3 190 53.7
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.6e-43 179.5 169 55.6
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.4e-43 179.1 187 53.5
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 3.4e-43 179.1 148 61.5
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 3.4e-43 179.1 187 54.0
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 5.7e-43 178.3 185 52.4
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.3e-42 177.2 105 80.0
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.8e-42 176.0 94 90.4
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 2.8e-42 176.0 187 54.0
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 8.3e-42 174.5 186 52.7
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.8e-41 173.3 190 52.6
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.8e-41 173.3 185 53.0
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 5.4e-41 171.8 186 52.2
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.2e-40 170.6 191 49.2
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.6e-40 170.2 198 51.5
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.6e-40 170.2 203 49.8
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 5.9e-40 168.3 201 49.3
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.9e-40 168.3 184 51.6
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.7e-39 166.8 145 60.7
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 2.3e-39 166.4 144 60.4
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.3e-39 166.4 165 54.5
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.9e-39 166.0 166 51.8
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.9e-39 166.0 124 65.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 3.8e-39 165.6 202 50.0
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 5.0e-39 165.2 166 51.8
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.5e-38 163.7 124 62.1
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.5e-38 162.9 206 48.5
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 2.5e-38 162.9 172 53.5
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.3e-38 162.5 146 56.2
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 4.3e-38 162.2 137 62.0
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 4.3e-38 162.2 180 51.7
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 9.5e-38 161.0 167 48.5
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 1.2e-37 160.6 198 47.5
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 1.6e-37 160.2 144 57.6
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 4.7e-37 158.7 199 46.2
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 4.7e-37 158.7 147 58.5
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 6.1e-37 158.3 205 47.8
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 6.1e-37 158.3 204 48.5
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 6.1e-37 158.3 205 47.8
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.0e-36 157.5 204 48.5
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.0e-36 157.5 235 41.7
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 1.4e-36 157.1 184 49.5
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.4e-36 157.1 82 89.0
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 3.0e-36 156.0 191 47.1
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 4.0e-36 155.6 205 47.8
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 4.0e-36 155.6 235 41.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.2e-36 155.2 235 41.7
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 5.2e-36 155.2 194 47.4
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 6.8e-36 154.8 162 53.1
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.2e-35 154.1 235 41.3
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.5e-35 153.7 205 46.8
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.0e-35 153.3 200 46.5
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 2.6e-35 152.9 204 47.1
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 2.6e-35 152.9 205 46.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 5.8e-35 151.8 204 47.5
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 5.8e-35 151.8 141 54.6
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.8e-35 151.0 235 41.3
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.3e-34 150.6 197 46.7
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.8e-32 141.4 208 41.8
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 9.5e-30 134.4 77 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 1.6e-29 133.7 183 42.1
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 4.7e-29 132.1 136 49.3
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 6.2e-29 131.7 183 39.9
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 6.4e-26 121.7 117 49.6
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 2.4e-25 119.8 157 42.7
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 4.6e-24 115.5 81 61.7
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.3e-23 114.0 131 48.9
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-23 113.2 95 58.9
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 4.7e-21 105.5 73 64.4
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 3.4e-19 99.4 122 46.7
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 2.2e-18 96.7 101 45.5
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 2.2e-18 96.7 174 36.8
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-17 94.4 115 43.5
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.1e-17 91.7 131 43.5
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 3.9e-15 85.9 98 53.1
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.6e-14 82.0 97 49.5
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.3e-14 81.6 123 43.1
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 2.8e-13 79.7 112 40.2
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 2.8e-13 79.7 172 32.6
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.2e-10 70.1 70 41.4
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.4e-09 67.4 124 37.9
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.9e-09 67.0 71 45.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.4e-09 66.6 117 30.8
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 7.3e-06 55.1 80 40.0
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 7.3e-06 55.1 63 41.3
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 9.6e-06 54.7 50 44.0


User provided reference genes

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