Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 2033.8 1056 100.0
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1842.0 1057 90.4
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1741.9 1119 84.3
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1704.5 1077 82.1
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1689.1 1061 83.2
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1675.2 1077 81.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1672.9 1074 81.4
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1660.2 1064 81.4
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1659.8 1075 81.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1659.0 1075 81.1
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1658.3 1088 80.1
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1649.0 1075 80.0
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1648.6 1171 77.4
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1645.6 1080 80.0
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1640.9 1069 80.1
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1640.2 1076 80.4
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1638.2 1074 80.1
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1636.7 1079 79.1
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1629.0 1079 79.3
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1628.6 1068 79.4
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1625.5 1074 80.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1623.2 1070 78.9
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1622.4 1075 79.1
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1618.2 1079 78.7
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1617.1 1076 79.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1612.0 1075 78.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1607.0 1069 78.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1603.6 1080 77.9
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1601.6 1075 78.1
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1598.2 1068 78.6
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1595.1 1078 77.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1590.5 1067 78.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1589.7 1081 76.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1588.2 1045 79.3
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1585.1 1067 78.3
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1583.2 1030 80.7
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1572.8 1067 77.7
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1556.2 1069 76.0
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1075 76.1
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1550.8 1072 76.3
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1549.3 1075 76.4
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1547.3 1070 76.0
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1545.0 1072 76.0
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1544.6 1075 75.9
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1541.2 1080 75.4
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1539.2 1074 75.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1535.4 1074 74.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1532.7 1081 74.9
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1531.2 1077 74.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1523.8 1081 74.7
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1517.7 1078 73.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1515.0 1074 73.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1503.0 1094 73.6
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1499.2 1147 71.3
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1484.2 1071 72.8
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1071 72.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1075 74.3
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1469.9 1071 72.4
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1466.1 1071 71.9
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1465.7 1081 73.0
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1462.2 1097 72.5
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1455.3 1072 71.7
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1455.3 1087 71.2
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1454.9 1087 71.2
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1449.5 1071 71.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1446.8 1106 70.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1091 70.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1439.1 983 77.0
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1436.4 1070 72.1
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1436.0 1106 69.3
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 1072 70.7
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 1076 70.4
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1425.6 1073 72.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1090 69.2
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1071 70.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1419.8 1090 69.6
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1418.7 1090 69.4
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1417.5 1057 71.1
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1415.2 1059 70.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1411.7 1148 69.5
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1406.7 1105 69.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1403.3 998 74.2
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1090 69.0
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1071 69.6
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1389.8 1070 69.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1387.1 1071 69.5
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1385.5 1085 69.1
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1377.1 1072 69.1
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1372.8 1108 67.7
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1366.3 1075 68.3
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1365.1 947 75.3
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1347.8 1066 69.1
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1321.6 1107 65.6
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1317.4 1072 64.7
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1315.8 1040 68.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1313.1 1172 64.1
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1307.4 1060 68.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1069 63.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1301.6 1071 66.4
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1300.4 1027 67.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1298.5 1074 64.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1260.0 1059 66.0
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1234.9 869 75.4
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1224.9 1260 57.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1190.3 1065 62.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1160.6 744 81.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1149.4 908 67.2
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1136.7 905 68.7
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 9.0e-305 1050.4 972 62.0
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 9.7e-299 1030.4 742 74.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.2e-294 1015.0 1091 52.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 4.5e-288 995.0 1076 50.6
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.9e-272 941.4 841 64.1
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.8e-271 938.7 631 78.8
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.2e-264 917.1 1082 48.7
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-251 873.2 1075 46.6
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.3e-250 870.5 772 64.1
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 8.0e-245 851.3 1054 46.7
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.0e-223 779.6 565 74.3
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 6.0e-216 755.4 515 75.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.6e-211 738.4 565 70.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.7e-210 737.3 583 68.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.2e-203 714.5 706 57.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 5.5e-201 705.7 564 69.7
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 6.7e-199 698.7 522 72.4
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.7e-189 666.4 840 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.4e-187 659.8 805 47.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.3e-181 641.3 1218 35.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 9.7e-174 615.1 426 74.2
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 7.5e-158 562.4 388 75.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.6e-150 537.3 372 76.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 6.3e-141 506.1 346 76.9
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.0e-138 496.5 392 66.1
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.9e-124 451.4 359 69.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 3.5e-123 447.2 320 75.3
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 4.4e-118 430.3 353 69.7
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.5e-118 429.5 366 66.9
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 8.4e-109 399.4 280 75.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 7.1e-108 396.4 280 76.8
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.3e-95 353.6 404 50.7
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 8.2e-80 303.1 228 71.1
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.0e-74 286.2 178 81.5
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.2e-67 262.7 194 74.2
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 6.5e-61 240.4 143 82.5
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.1e-58 230.7 162 73.5
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 3.8e-53 214.5 130 80.8
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.2e-52 211.1 108 95.4
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 6.1e-51 207.2 129 83.7
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.0e-45 189.9 139 67.6
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.6e-38 166.0 141 65.2
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.1e-36 159.8 103 76.7
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-36 159.8 104 76.0
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 8.0e-35 153.7 86 82.6
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 4.0e-34 151.4 179 50.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.8e-34 150.2 85 84.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.4e-33 148.3 169 50.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 7.5e-33 147.1 111 69.4
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.3e-32 146.4 104 69.2
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.1e-31 140.2 87 75.9
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-27 128.6 92 72.8
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.3e-26 125.6 215 33.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-26 124.0 104 61.5
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.0e-25 122.5 79 72.2
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.7e-24 118.2 87 71.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 8.3e-24 117.1 86 66.3
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.5e-22 111.7 81 66.7
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 9.5e-20 103.6 99 58.6
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 7.5e-17 94.0 81 61.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 7.5e-17 94.0 81 61.7
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.2e-14 86.7 49 85.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.7e-13 82.8 61 70.5
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.7e-13 82.8 61 70.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 7.3e-12 77.4 71 53.5
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.1e-11 75.9 56 67.9
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 3.1e-10 72.0 48 72.9
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 4.0e-10 71.6 53 66.0
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 9.8e-09 67.0 52 67.3
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 3.5e-06 58.5 52 51.9


User provided reference genes

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