Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.3e-117 426.4 220 100.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 7.8e-102 374.0 212 91.5
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 3.5e-78 295.4 217 73.7
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 7.4e-76 287.7 217 73.3
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 5.9e-73 278.1 179 79.3
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 8.5e-72 274.2 215 69.8
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 8.5e-72 274.2 206 70.4
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 8.5e-72 274.2 211 70.6
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 2.7e-70 269.2 212 67.9
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.8e-69 266.5 204 69.6
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 8.7e-69 264.2 202 70.8
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.1e-68 263.8 211 67.8
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-68 263.5 204 67.6
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-68 263.5 204 67.6
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 2.5e-68 262.7 190 73.2
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 3.3e-68 262.3 208 66.3
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 3.3e-68 262.3 212 64.6
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.3e-68 262.3 204 67.2
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 3.3e-68 262.3 211 67.3
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 5.7e-68 261.5 211 69.2
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 5.7e-68 261.5 211 67.3
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 7.4e-68 261.2 207 68.6
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.3e-67 260.4 204 67.2
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 4.8e-67 258.5 211 66.8
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 8.2e-67 257.7 197 70.1
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.8e-66 256.5 182 72.5
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.4e-66 256.1 182 72.0
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-65 253.4 204 65.7
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.5e-63 246.1 210 63.3
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.5e-63 246.1 183 71.0
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 5.5e-63 245.0 207 66.7
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 5.5e-63 245.0 183 71.0
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 9.4e-63 244.2 207 65.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.6e-62 243.4 206 66.0
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 2.7e-62 242.7 209 63.2
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 4.6e-62 241.9 153 77.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 7.9e-62 241.1 168 69.0
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 7.9e-62 241.1 183 69.4
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 1.0e-61 240.7 191 63.4
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 2.3e-61 239.6 171 69.0
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 3.0e-61 239.2 191 62.8
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 3.0e-61 239.2 207 65.7
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.9e-61 238.8 149 79.2
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.1e-61 238.4 212 62.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 5.1e-61 238.4 211 61.1
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 5.1e-61 238.4 151 78.1
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 6.7e-61 238.0 152 77.0
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 6.7e-61 238.0 152 77.0
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 6.7e-61 238.0 183 69.4
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 8.8e-61 237.7 176 68.2
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 8.8e-61 237.7 203 64.5
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 2.0e-60 236.5 217 62.2
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 3.3e-60 235.7 178 66.9
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.3e-60 235.7 149 78.5
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.4e-60 235.3 193 62.7
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 5.7e-60 235.0 186 66.1
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 9.7e-60 234.2 207 61.8
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.2e-59 233.0 211 59.7
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.8e-59 232.6 183 64.5
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.8e-59 232.6 209 61.7
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 3.7e-59 232.3 179 66.5
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 3.7e-59 232.3 213 63.4
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 4.8e-59 231.9 195 62.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 6.3e-59 231.5 156 73.7
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 6.3e-59 231.5 183 65.0
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.1e-58 230.7 186 67.2
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 2.4e-58 229.6 192 63.0
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 2.4e-58 229.6 198 61.1
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 4.1e-58 228.8 144 79.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 4.1e-58 228.8 177 66.1
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.2e-57 227.3 215 61.9
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.2e-57 227.3 184 65.2
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.5e-57 226.9 215 60.9
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 2.0e-57 226.5 206 57.3
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.4e-57 225.7 206 58.7
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 1.3e-56 223.8 177 66.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.7e-56 223.4 227 58.1
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 5.0e-56 221.9 209 61.2
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 6.5e-56 221.5 172 69.8
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.4e-55 220.3 147 72.8
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 5.5e-55 218.4 188 61.2
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.6e-54 216.9 219 55.7
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 2.7e-54 216.1 145 73.1
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 3.0e-53 212.6 179 66.5
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 6.7e-53 211.5 152 71.7
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 9.7e-52 207.6 173 60.7
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 4.8e-51 205.3 124 79.8
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.0e-45 187.6 167 62.3
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 4.4e-44 182.2 149 66.4
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.7e-43 180.3 150 62.7
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 7.7e-41 171.4 154 55.8
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 7.7e-41 171.4 154 55.8
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 1.7e-40 170.2 119 71.4
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 2.3e-37 159.8 149 52.3
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 5.2e-37 158.7 87 87.4
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 2.6e-36 156.4 147 57.8
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.6e-30 137.1 149 47.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 8.8e-29 131.3 206 38.8
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 7.8e-25 118.2 122 51.6
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.8e-24 115.9 115 56.5
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 1.4e-21 107.5 72 73.6
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.8e-21 107.1 185 34.1
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 9.2e-18 94.7 211 37.9
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.2e-17 94.4 138 32.6
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 2.3e-16 90.1 153 35.3
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.6e-16 88.6 212 35.4
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.3e-11 74.3 141 29.1
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 4.9e-11 72.4 48 75.0
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.4e-10 68.9 50 68.0
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 7.8e-09 65.1 39 79.5
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.3e-08 64.3 52 69.2
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.3e-07 59.3 43 55.8
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 7.3e-07 58.5 33 78.8


User provided reference genes

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