Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 3.2e-306 1054.3 537 100.0
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 2.6e-276 954.9 542 89.3
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.5e-271 938.3 538 89.2
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 9.4e-250 866.7 537 79.0
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 8.2e-246 853.6 529 78.8
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 2.0e-244 849.0 535 77.8
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 7.7e-244 847.0 535 77.8
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.6e-241 839.3 527 76.7
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 2.7e-241 838.6 527 76.7
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.0e-240 836.6 535 76.1
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 2.3e-240 835.5 536 77.8
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 3.0e-240 835.1 532 76.7
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.5e-239 832.8 538 77.5
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.0e-239 832.4 535 77.4
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 3.1e-237 825.1 534 75.5
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 1.6e-236 822.8 537 76.4
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 2.2e-235 818.9 538 74.9
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 6.5e-235 817.4 538 75.1
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 2.5e-234 815.5 513 77.8
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 7.2e-234 813.9 534 74.7
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 9.4e-234 813.5 517 77.2
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 2.7e-233 812.0 536 75.4
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 4.7e-233 811.2 538 74.9
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.3e-232 808.9 535 74.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 6.8e-232 807.4 530 75.8
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 1.2e-231 806.6 529 74.7
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 4.4e-231 804.7 537 73.6
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 4.4e-231 804.7 529 74.7
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 5.7e-231 804.3 516 78.5
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 4.9e-230 801.2 541 75.2
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 8.3e-230 800.4 541 74.9
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 7.0e-229 797.3 538 72.9
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 2.0e-228 795.8 513 76.0
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.0e-227 793.5 535 73.5
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 2.3e-227 792.3 531 72.9
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 2.5e-226 788.9 539 73.8
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 2.8e-225 785.4 514 75.7
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 4.7e-225 784.6 538 72.5
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.5e-223 779.6 534 72.1
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 2.0e-223 779.2 538 72.5
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.6e-223 778.9 534 71.7
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 1.3e-222 776.5 537 72.6
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.6e-220 769.6 526 74.3
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.5e-220 768.5 535 72.0
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.0e-219 766.9 538 72.3
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.3e-218 761.9 529 71.1
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 4.3e-218 761.5 533 71.7
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 5.6e-218 761.1 533 71.5
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 5.6e-218 761.1 589 66.2
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 5.6e-218 761.1 538 70.8
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.2e-217 760.0 537 69.6
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 3.6e-217 758.4 537 71.9
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.0e-216 756.9 533 71.5
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 2.3e-216 755.7 519 72.1
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 3.1e-216 755.4 535 71.2
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 5.2e-216 754.6 536 70.5
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 1.2e-215 753.4 533 71.1
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 5.8e-215 751.1 537 70.8
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 9.8e-215 750.4 544 70.2
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.3e-214 750.0 514 72.2
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 1.7e-214 749.6 521 71.2
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.7e-214 749.6 531 69.5
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 2.2e-214 749.2 529 70.9
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 3.7e-214 748.4 523 71.7
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 8.3e-214 747.3 527 70.2
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 3.2e-213 745.3 536 70.3
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 7.0e-213 744.2 522 70.1
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 7.0e-213 744.2 519 71.1
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.3e-211 740.0 540 68.1
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.7e-211 739.6 535 70.3
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 3.3e-210 735.3 521 71.0
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 3.3e-210 735.3 450 77.8
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 4.3e-210 734.9 535 70.1
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 2.1e-209 732.6 516 70.2
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 6.2e-209 731.1 491 73.7
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 6.2e-209 731.1 535 69.2
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 1.4e-208 729.9 536 68.7
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.4e-208 729.9 530 70.8
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 2.3e-208 729.2 538 69.0
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 6.8e-208 727.6 518 69.3
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.6e-207 725.7 517 71.2
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.6e-207 725.7 540 68.3
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 2.2e-206 722.6 612 62.4
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 3.7e-206 721.8 573 66.5
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 6.4e-206 721.1 575 63.8
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-205 719.9 540 67.8
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.7e-203 713.0 528 67.6
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.1e-200 703.7 537 65.5
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.8e-200 703.0 514 68.1
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.1e-200 702.2 539 67.9
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 3.1e-200 702.2 538 66.2
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 6.4e-198 694.5 584 63.9
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 1.4e-197 693.3 520 66.5
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 1.9e-197 693.0 540 65.9
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.2e-193 680.2 533 65.7
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.6e-193 679.9 534 65.2
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 2.8e-193 679.1 518 65.1
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 8.1e-193 677.6 467 72.4
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 3.2e-189 665.6 579 61.3
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 1.6e-188 663.3 564 61.3
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 2.7e-188 662.5 554 61.2
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.3e-187 659.4 433 74.8
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.9e-186 656.4 528 64.8
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.3e-186 655.6 540 63.9
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 7.3e-186 654.4 553 61.5
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 7.1e-181 637.9 508 63.6
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 3.0e-179 632.5 512 62.7
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 1.1e-178 630.6 495 63.8
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.9e-173 613.2 511 65.0
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 2.0e-167 593.2 409 71.4
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.6e-167 592.8 472 65.0
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 7.6e-167 591.3 518 57.5
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 2.3e-163 579.7 465 65.8
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.8e-160 570.1 510 60.6
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 2.2e-153 546.6 430 63.7
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.3e-134 484.2 506 50.0
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 2.2e-134 483.4 477 52.2
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 1.9e-133 480.3 448 60.0
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 3.3e-130 469.5 497 48.9
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.3e-129 467.6 517 48.5
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 9.1e-128 461.5 328 70.7
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.3e-121 441.0 311 71.4
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 1.2e-119 434.5 526 43.9
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 9.4e-117 424.9 509 44.4
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 8.0e-116 421.8 474 47.0
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 3.6e-108 396.4 512 42.8
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.1e-104 384.8 271 69.7
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 4.6e-103 379.4 292 65.1
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 1.0e-102 378.3 518 44.8
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 8.9e-99 365.2 319 59.9
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.6e-98 363.6 357 52.1
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 1.7e-78 297.7 526 35.7
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.4e-43 181.0 105 81.9
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.2e-31 142.1 125 56.0
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 3.6e-23 114.0 75 74.7
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 6.3e-20 103.2 76 71.1
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 4.1e-19 100.5 65 69.2
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 5.5e-16 90.1 58 77.6
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 1.2e-15 89.0 55 81.8
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 1.2e-13 82.4 63 60.3
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 4.4e-13 80.5 126 40.5
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 1.2e-10 72.4 67 55.2
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 8.5e-09 66.2 48 70.8
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 8.5e-09 66.2 48 70.8
Rhsim13G0179400 Rhododendron simsii HOM05D000836 ORTHO05D000709 3.0e-06 57.8 161 23.6
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 5.2e-06 57.0 243 23.0
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 6.8e-06 56.6 169 24.3
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 8.8e-06 56.2 241 23.2


User provided reference genes

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