Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 0.0e+00 1245.0 685 100.0
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 2.7e-286 988.4 687 82.2
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 2.5e-223 779.2 776 62.6
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.3e-168 596.7 698 54.6
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.0e-144 516.5 706 49.4
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 9.8e-135 485.0 750 46.4
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.1e-130 471.5 733 47.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 1.1e-128 464.9 745 49.0
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 2.0e-127 460.7 704 49.0
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 5.1e-123 446.0 582 50.0
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 9.5e-122 441.8 697 46.1
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.0e-120 436.4 723 43.6
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.4e-119 433.3 601 47.6
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 4.9e-118 429.5 712 44.9
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.1e-117 428.3 747 43.5
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.4e-117 427.9 597 47.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 5.4e-117 426.0 751 42.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.2e-116 424.9 699 45.2
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 2.1e-116 424.1 751 42.9
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.6e-116 422.9 760 45.3
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.0e-115 421.8 738 44.2
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 8.6e-115 418.7 703 44.4
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 3.3e-114 416.8 754 44.7
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.1e-113 414.1 581 47.5
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 3.2e-109 400.2 783 41.4
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.2e-103 381.7 737 45.2
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 3.8e-102 376.7 830 37.5
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.1e-101 375.2 702 40.9
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.4e-101 374.0 723 40.9
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 8.7e-99 365.5 698 39.3
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.5e-98 364.8 712 39.6
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 5.6e-98 362.8 682 40.3
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.3e-97 361.7 699 40.2
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.6e-97 361.3 715 39.3
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.1e-96 358.6 700 41.3
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 3.4e-95 353.6 705 41.3
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.6e-95 352.4 728 38.0
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 7.6e-95 352.4 710 39.7
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.4e-93 347.4 577 44.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 7.1e-93 345.9 700 40.0
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.6e-92 344.7 702 39.0
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.6e-92 344.7 658 38.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.3e-91 341.7 703 39.1
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 8.1e-89 332.4 724 39.1
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.8e-88 331.3 710 38.9
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.3e-88 329.7 788 36.0
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.2e-84 318.5 652 42.0
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 2.7e-84 317.4 660 37.3
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.0e-83 315.5 701 37.9
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.3e-83 314.3 778 35.9
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-81 308.1 752 35.4
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.4e-80 305.1 646 37.9
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.8e-80 304.7 697 36.6
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 5.8e-79 299.7 481 47.0
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.4e-77 295.0 763 33.0
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.2e-76 292.0 720 36.9
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.1e-75 286.6 582 39.3
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 6.7e-75 286.2 293 59.4
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.2e-73 281.2 676 37.1
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.1e-72 277.3 679 36.1
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.5e-70 269.6 703 36.6
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.1e-69 268.9 683 37.6
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.4e-69 268.5 714 36.6
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.2e-69 267.3 643 37.6
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 2.1e-68 264.6 690 36.7
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 2.7e-68 264.2 707 35.9
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 6.1e-68 263.1 700 35.1
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 6.1e-68 263.1 709 35.7
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.4e-67 261.9 707 35.1
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.0e-67 260.8 716 35.6
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.2e-65 254.6 532 38.7
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 2.2e-65 254.6 630 36.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.8e-64 251.5 692 36.0
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.1e-64 250.4 707 35.1
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.3e-62 245.4 584 37.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 5.0e-62 243.4 691 35.7
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.5e-58 231.9 546 35.9
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.4e-56 225.3 550 36.0
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 7.0e-56 223.0 585 34.2
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.9e-55 219.9 584 34.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.5e-54 216.5 673 34.8
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 6.1e-52 209.9 534 37.5
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.4e-51 208.8 570 36.8
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.8e-51 208.4 543 36.6
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 2.3e-51 208.0 591 33.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.1e-50 205.7 606 35.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 3.3e-50 204.1 477 38.4
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 7.4e-50 203.0 619 32.0
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 7.4e-50 203.0 566 34.5
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.2e-49 201.4 601 32.1
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.1e-48 199.1 350 41.7
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.8e-48 198.4 529 36.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 5.3e-48 196.8 585 33.0
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 5.3e-48 196.8 585 33.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.6e-47 195.3 539 33.0
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 2.0e-47 194.9 703 30.6
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 3.5e-47 194.1 567 35.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 5.9e-47 193.4 591 32.8
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 5.9e-47 193.4 596 30.9
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.9e-46 191.0 595 32.6
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.8e-46 190.7 507 37.9
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.0e-46 190.3 499 37.5
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 6.5e-46 189.9 586 32.9
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 8.5e-46 189.5 583 31.9
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 8.0e-44 183.0 556 32.7
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.5e-42 178.7 588 32.7
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 9.8e-42 176.0 582 31.4
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.3e-41 175.6 580 31.9
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.2e-41 174.9 420 37.1
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 6.3e-41 173.3 567 30.9
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.8e-40 171.8 580 30.5
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.5e-39 167.5 392 38.0
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.7e-38 165.2 553 31.8
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.0e-34 151.8 683 29.4
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 3.7e-33 147.5 556 32.2
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.3e-30 139.0 697 27.3
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.3e-30 138.3 332 35.8
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.6e-23 115.5 215 41.9
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 4.6e-23 114.0 288 36.1
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.5e-21 109.0 389 33.4
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 7.3e-21 106.7 358 32.4
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 2.8e-20 104.8 358 32.4
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.5e-18 99.0 399 29.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 8.3e-17 93.2 167 44.3
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 4.1e-16 90.9 417 28.3
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.1e-13 82.8 370 26.8
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.3e-06 59.3 309 28.5


User provided reference genes

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