Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.2e-124 446.8 213 100.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.9e-117 425.2 213 94.4
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 8.9e-111 403.7 213 89.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 5.1e-106 387.9 213 84.5
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 4.0e-103 378.3 212 81.1
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 4.4e-102 374.8 213 80.3
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.2e-101 372.5 213 80.8
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.9e-101 371.3 213 82.6
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 1.4e-100 369.8 213 80.8
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.2e-100 368.6 208 80.8
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.2e-100 368.6 213 79.3
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.2e-100 368.2 213 81.2
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.2e-100 368.2 213 79.3
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 4.2e-100 368.2 208 81.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 80.3
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 80.3
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 2.1e-99 365.9 213 79.3
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 6.0e-99 364.4 213 80.3
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.0e-99 364.4 213 79.3
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 7.9e-99 364.0 213 81.2
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 79.8
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 79.8
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-97 360.1 213 79.3
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.9e-97 359.4 213 79.8
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 79.3
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 79.3
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 79.3
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.3e-97 358.2 208 79.3
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 4.3e-97 358.2 213 77.9
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 4.3e-97 358.2 213 78.4
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 4.3e-97 358.2 213 77.9
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 78.8
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 5.6e-97 357.8 213 80.3
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 5.6e-97 357.8 213 80.3
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.3e-97 357.5 208 79.3
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 9.6e-97 357.1 213 80.3
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.3e-96 356.7 208 78.4
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 78.4
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 78.4
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.8e-96 355.5 213 77.9
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 78.8
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 3.6e-96 355.1 208 77.9
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.1e-95 353.6 213 78.4
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.4e-95 353.2 213 78.4
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.8e-95 352.8 208 77.9
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 1.8e-95 352.8 214 77.1
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 9.0e-95 350.5 211 75.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 9.0e-95 350.5 213 77.5
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.5e-94 349.7 198 80.8
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.5e-94 349.7 208 77.4
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.5e-94 349.7 208 76.4
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.0e-94 349.4 213 75.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 2.0e-94 349.4 208 77.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 2.6e-94 349.0 208 77.9
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.5e-94 348.2 208 76.4
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.5e-94 348.2 208 75.0
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 4.5e-94 348.2 204 79.4
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 5.8e-94 347.8 208 77.4
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.7e-93 346.3 208 75.0
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 2.2e-93 345.9 213 73.7
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 2.9e-93 345.5 213 75.1
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.9e-93 345.5 208 74.0
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.8e-93 345.1 208 75.5
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 4.9e-93 344.7 213 75.1
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 6.4e-93 344.4 206 75.7
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.9e-92 342.8 231 70.6
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.4e-92 342.4 207 73.9
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 3.2e-92 342.0 207 75.4
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 3.2e-92 342.0 208 75.5
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 208 75.5
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 3.2e-92 342.0 208 75.5
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 9.3e-92 340.5 211 73.9
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 9.3e-92 340.5 206 74.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.7e-91 339.0 193 81.9
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 2.7e-91 339.0 208 75.0
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.5e-91 338.6 204 75.0
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 4.6e-91 338.2 211 73.5
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 6.0e-91 337.8 208 75.0
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 6.0e-91 337.8 208 73.1
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 7.9e-91 337.4 208 72.6
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 7.9e-91 337.4 206 73.3
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 7.9e-91 337.4 203 75.9
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.0e-90 337.0 211 74.4
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.0e-90 337.0 206 72.8
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.3e-90 336.7 204 76.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.8e-90 336.3 206 72.8
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.8e-90 336.3 206 72.8
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.3e-90 335.9 206 72.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.3e-90 335.9 208 71.6
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.0e-90 335.5 205 74.6
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 3.9e-90 335.1 204 74.0
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.9e-90 335.1 204 74.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.9e-90 335.1 204 74.0
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.1e-90 334.7 206 72.8
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 1.5e-89 333.2 253 66.0
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.5e-89 333.2 202 74.8
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 4.3e-89 331.6 208 73.1
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 9.6e-89 330.5 228 69.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.6e-88 329.7 203 74.4
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.6e-88 329.7 204 75.0
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.1e-88 329.3 203 73.9
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.1e-88 329.3 217 75.1
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.1e-88 329.3 208 71.6
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 2.8e-88 328.9 213 71.8
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 3.7e-88 328.6 203 73.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 6.2e-88 327.8 210 71.4
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.1e-87 327.0 203 73.4
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 1.8e-87 326.2 211 70.1
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 4.9e-85 318.2 202 71.3
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 8.4e-85 317.4 205 68.8
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 8.4e-85 317.4 294 56.5
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.1e-84 317.0 207 70.0
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.5e-84 315.8 207 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.3e-82 310.1 203 69.0
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.3e-80 303.5 209 68.9
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.4e-79 299.3 166 81.9
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.0e-77 293.9 178 78.7
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.3e-77 293.5 204 68.6
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.1e-73 280.4 169 77.5
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 5.5e-68 261.5 429 39.4
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 6.7e-66 254.6 145 78.6
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 2.5e-65 252.7 145 77.9
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 5.7e-65 251.5 209 60.3
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 9.7e-65 250.8 145 75.9
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.1e-63 247.3 171 69.0
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.2e-54 217.2 138 73.2
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 8.0e-51 204.5 113 81.4
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.2e-50 201.8 109 89.9
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.3e-48 197.2 202 47.0
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.7e-46 189.5 196 49.5
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 8.5e-45 184.5 125 69.6
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 7.5e-41 171.4 195 43.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.0e-38 163.3 92 81.5
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 4.5e-38 162.2 167 49.1
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 6.8e-34 148.3 96 69.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 1.2e-33 147.5 79 86.1
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 9.2e-31 137.9 74 82.4
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 7.7e-30 134.8 95 64.2
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.4e-23 114.0 72 75.0
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 2.1e-19 100.1 64 71.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 3.6e-19 99.4 74 62.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.2e-16 90.1 63 65.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.0e-14 82.0 57 66.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 3.1e-10 69.7 40 80.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.2e-09 67.8 35 82.9
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.0e-09 67.0 35 80.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.1e-07 61.2 32 81.2
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.5e-06 56.2 60 51.7


User provided reference genes

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