Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.4e-106 389.0 228 100.0
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 9.0e-85 317.4 173 90.8
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 3.1e-77 292.4 183 78.7
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.5e-76 290.0 183 77.6
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.5e-76 290.0 183 77.6
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.4e-76 288.9 182 81.3
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 6.5e-75 284.6 179 79.9
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.9e-74 283.1 244 63.9
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 3.2e-74 282.3 183 76.5
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 3.6e-73 278.9 228 67.1
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 6.3e-70 268.1 183 74.9
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.8e-69 266.5 183 74.3
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 6.9e-69 264.6 228 70.6
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 9.1e-69 264.2 171 76.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 9.1e-69 264.2 183 71.0
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.0e-68 263.1 179 73.7
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 2.0e-68 263.1 177 74.0
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 4.5e-68 261.9 171 76.0
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.5e-68 261.9 182 70.9
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 2.2e-67 259.6 181 71.3
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.8e-67 258.8 179 70.9
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 5.0e-67 258.5 188 69.7
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 6.5e-67 258.1 183 71.6
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 6.5e-67 258.1 229 67.7
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.1e-66 257.3 183 71.6
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.9e-66 256.5 176 71.0
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 1.9e-66 256.5 183 69.9
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 4.2e-66 255.4 160 76.2
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 4.2e-66 255.4 184 69.0
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 7.2e-66 254.6 175 72.6
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 7.2e-66 254.6 175 72.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 7.2e-66 254.6 246 64.2
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.2e-65 253.8 183 70.5
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.2e-65 253.8 184 69.6
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.2e-65 253.8 184 69.6
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.6e-65 253.4 183 71.0
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 2.1e-65 253.1 183 70.5
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.1e-65 253.1 233 65.2
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 2.1e-65 253.1 177 70.6
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 2.1e-65 253.1 188 67.0
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 2.1e-65 253.1 160 76.2
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.7e-65 252.7 228 66.2
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 3.6e-65 252.3 226 71.7
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 3.6e-65 252.3 183 70.5
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 3.6e-65 252.3 234 67.9
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 4.7e-65 251.9 179 69.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 4.7e-65 251.9 176 68.2
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 7.9e-65 251.1 172 70.9
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 1.0e-64 250.8 184 69.0
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 1.0e-64 250.8 183 67.2
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 1.0e-64 250.8 183 67.2
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 1.0e-64 250.8 184 69.0
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.4e-64 250.4 145 84.8
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 1.4e-64 250.4 166 77.1
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.4e-64 250.4 183 69.9
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.4e-64 250.4 185 69.2
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-64 250.4 238 66.0
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.4e-64 250.4 164 72.6
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 2.3e-64 249.6 172 72.1
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 3.0e-64 249.2 147 80.3
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 6.7e-64 248.1 154 77.9
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 8.8e-64 247.7 188 66.0
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 2.0e-63 246.5 221 60.2
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 2.0e-63 246.5 240 64.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 2.6e-63 246.1 172 70.3
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 3.3e-63 245.7 172 70.9
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 4.4e-63 245.4 179 70.9
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.7e-63 245.0 179 70.9
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.3e-62 243.8 175 72.6
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 1.3e-62 243.8 184 69.6
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.8e-62 242.7 154 77.3
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.8e-62 241.9 176 69.3
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 1.1e-61 240.7 176 70.5
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 1.1e-61 240.7 173 72.8
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.4e-61 239.6 172 72.7
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 4.1e-61 238.8 134 84.3
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 9.1e-61 237.7 155 75.5
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 3.5e-60 235.7 184 66.3
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 3.5e-60 235.7 144 79.2
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.7e-60 234.6 228 65.8
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.5e-58 230.3 158 72.8
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 1.9e-58 229.9 225 63.6
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.9e-58 229.9 172 67.4
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.4e-58 227.6 130 84.6
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 9.4e-58 227.6 139 77.0
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 9.4e-58 227.6 136 81.6
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 6.7e-56 221.5 192 60.9
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.3e-55 219.2 185 63.2
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 7.0e-53 211.5 184 62.5
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 9.8e-47 191.0 170 61.2
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 4.8e-46 188.7 181 55.8
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 3.1e-45 186.0 175 57.1
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 7.7e-44 181.4 189 51.9
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 1.7e-43 180.3 136 62.5
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.0e-40 171.0 127 69.3
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.5e-39 167.2 91 84.6
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.6e-39 166.4 143 62.9
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 9.8e-39 164.5 189 50.3
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 3.7e-38 162.5 140 65.0
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.4e-37 158.7 182 51.6
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 6.3e-30 135.2 178 56.7
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 6.3e-30 135.2 178 56.7
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.7e-28 129.8 131 54.2
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 1.0e-27 127.9 147 48.3
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 9.2e-21 104.8 104 55.8
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.3e-19 100.9 89 62.9
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.7e-19 100.5 80 68.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.5e-18 96.7 108 46.3
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 3.3e-18 96.3 103 52.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 1.9e-13 80.5 55 69.1
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.3e-11 73.6 37 94.6
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 3.9e-11 72.8 126 45.2
Sabra08G0012500 Salix brachista HOM05D006601 ORTHO05D008281 2.1e-09 67.0 46 71.7
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 3.6e-09 66.2 31 83.9
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.1e-08 63.2 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.0e-08 62.8 58 53.4
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 3.7e-06 56.2 119 39.5
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 8.4e-06 55.1 25 84.0


User provided reference genes

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